CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
LOC_Os04g04550
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os04g04550
T11118_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os04g04550.1
CCHC ZF
264
281
VVCFNCGEPGHYADKCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
634 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PBANKA_040790
Plasmodium berghei
PBANKA_040790
N
0.000
PCHAS_040880
Plasmodium chabaudi
PCHAS_040880
N
0.000
PKH_083040
Plasmodium knowlesi
PKH_083040
N
0.000
PVX_119595
Plasmodium vivax
PVX_119595
N
0.000
PY07308
Plasmodium yoelii
PY07308
N
0.000