CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
LOC_Os05g01130
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os05g01130
T11347_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os05g01130.1
CCHC ZF
240
257
RTCFVCGQVGHLARKCPQ
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
157 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AB02851.1
Alternaria brassicicola
AB02851.1
N
0.000
fgenesh1_pg.C_scaffold_3000314
Cochliobolus heterostrophus C5
fgenesh1_pg.C_scaffold_3000314
N
0.000
PTRG_07929
Pyrenophora tritici repentis
PTRG_07929
N
0.000
SNOG_15247
Stagonospora nodorum
SNOG_15247
N
0.000