CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SNOG_15247
(
Stagonospora nodorum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
SNOG_15247
T30643_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
SNOT_15247
RRM
200
270
LFVGSLSWNIDEDWLRREFEGFGEITGCRVITDRESGRSKGFGYVEFASAADAAKAKAEMHEYELDGRGLN
SNOT_15247
RRM
300
370
LFLGNLSFDCSNEGIQEIFQEYGNITRVSLPTDRDTGSLKGFGYVDFGTVEEATAALEALNGQEVEGRAIR
Links
Other
RRM
family RBPs
Other
Stagonospora nodorum
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
EAT77472.1
Phaeosphaeria nodorum
EAT77472.1
N
1.000
AB02851.1
Alternaria brassicicola
AB02851.1
N
0.859
PTRG_07929
Pyrenophora tritici repentis
PTRG_07929
N
0.838
fgenesh1_pg.C_scaffold_3000314
Cochliobolus heterostrophus C5
fgenesh1_pg.C_scaffold_3000314
N
0.824