CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
LOC_Os05g19540
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os05g19540
T11455_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os05g19540.1
CCHC ZF
295
312
RTCFVCGQVGHLVRKCPQ
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
153 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CpipJ_CPIJ018619
Culex pipiens
CpipJ_CPIJ018619
N
0.000
CPIJ018619
Culex quinquefasciatus
CPIJ018619
N
0.000
GF15723
Drosophila ananassae
FBgn0092747
N
0.000
GG10062
Drosophila erecta
FBgn0102374
N
0.000
GH11300
Drosophila grimshawi
FBgn0118780
N
0.000
Srp54
Drosophila melanogaster
FBgn0024285
N
0.000
GI17720
Drosophila mojavensis
FBgn0140461
N
0.000
GL18941
Drosophila persimilis
FBgn0156542
N
0.000
GA18291-RA
Drosophila pseudoobscura
FBgn0078296
N
0.000
GM17744
Drosophila sechellia
FBgn0172652
N
0.000
GJ17548
Drosophila virilis
FBgn0204718
N
0.000
GK18279
Drosophila willistoni
FBgn0220278
N
0.000
GE18876
Drosophila yakuba
FBgn0236256
N
0.000