LOC_Os05g22850 (Oryza sativa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LOC_Os05g22850 T11483_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os05g22850.1 CCHC ZF 39 55
LOC_Os05g22850.1 CCHC ZF 211 228
LOC_Os05g22850.1 CCHC ZF 247 263

Links

Other CCHC ZF family RBPs
Other Oryza sativa RBPs

43 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_fgenesh2_kg.C_10652 Agaricus bisporus estExt_fgenesh2_kg.C_10652 N 0.000
CC1G_03708 Coprinopsis cinerea CC1G_03708 N 0.000
CNBG_5957 Cryptococcus neoformans CNBG_5957 N 0.000
estExt_Genewise1.C_11756 Heterobasidion annosum estExt_Genewise1.C_11756 N 0.000
e_gww1.1.421.1 Laccaria bicolor e_gww1.1.421.1 N 0.000
estExt_fgenesh1_pm.C_10116 Melampsora laricis populina estExt_fgenesh1_pm.C_10116 N 0.000
gwh2.11.204.1 Phanerochaete chrysosporium gwh2.11.204.1 N 0.000
estExt_Genewise1Plus.C_30831 Pleurotus ostreatus estExt_Genewise1Plus.C_30831 N 0.000
estExt_Genewise1.C_1650013 Postia placenta estExt_Genewise1.C_1650013 N 0.000
estExt_Genewise1Plus.C_850030 Postia placenta estExt_Genewise1Plus.C_850030 N 0.000
PGTG_08590 Puccinia graminis PGTG_08590 N 0.000
PTTG_06273 Puccinia triticina PTTG_06273 N 0.000
estExt_fgenesh1_kg.C_10369 Schizophyllum commune estExt_fgenesh1_kg.C_10369 N 0.000
estExt_fgenesh2_kg.C_11202 Serpula lacrymans estExt_fgenesh2_kg.C_11202 N 0.000
gw1.8.122.1 Sporobolomyces roseus gw1.8.122.1 N 0.000
estExt_fgeneshTM_pm.C_70082 Tremella mesenterica estExt_fgeneshTM_pm.C_70082 N 0.000