B9N0D8_POPTR (Populus trichocarpa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 POPTR_0004s23270 T12708_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0004s23270.1 CCHC ZF 544 561

Links

Other CCHC ZF family RBPs
Other Populus trichocarpa RBPs

80 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s13610g5t1 Acyrtosiphon pisum DGIL_AUG5s13610g5t1 N 0.833
Ame_R016826 Ailuropoda melanoleuca Ame_R016826 N 0.833
Aqu1.208454 Amphimedon queenslandica Aqu1.208454 N 0.889
DDX41 Anolis carolinensis ENSACAG00000005778 N 0.833
amel4_ncbi_hmm26429 Apis mellifera amel4_ncbi_hmm26429 N 0.778
XM_002888366.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000621 N 1.000
XM_002864058.1 Arabidopsis lyrata scaffold_801560.1 N 1.000
AT5G51280 Arabidopsis thaliana AT5G51280-TAIR-G N 1.000
A3KN07_BOVIN Bos taurus ENSBTAG00000015187 N 0.833
BRADI3G03990 Brachypodium distachyon BRADI3G03990 N 0.722
estExt_gwp.C_560110 Branchiostoma floridae estExt_gwp.C_560110 N 0.889
fgenesh2_pg.scaffold_54000122 Branchiostoma floridae fgenesh2_pg.scaffold_54000122 N 0.889
A6ML97_CALJA Callithrix jacchus ENSCJAG00000006595 N 0.833
DDX41 Canis familiaris ENSCAFG00000016304 N 0.833
estExt_Genewise1.C_3700007 Capitella teleta estExt_Genewise1.C_3700007 N 0.833
CAOG_05012 Capsaspora owczarzaki CAOG_05012 N 0.722
ENSCPOG00000008770 Cavia porcellus ENSCPOG00000008770 N 0.833
Cucsa.105640 Cucumis sativus Cucsa.105640 N 1.000
Ddx41 Dipodomys ordii ENSDORG00000010781 N 0.833
ENSETEG00000013165 Echinops telfairi ENSETEG00000013165 N 0.778
ENSETEG00000012955 Echinops telfairi ENSETEG00000012955 N 0.833
LOC100058316 Equus caballus ENSECAG00000009688 N 0.833
DDX41 Erinaceus europaeus ENSEEUG00000001733 N 0.833
DDX41 Felis catus ENSFCAG00000001542 N 0.833
DDX41 Gallus gallus ENSGALG00000003030 N 0.833
DDX41 Gasterosteus aculeatus ENSGACG00000018334 N 0.778
Glyma03g39670.1 Glycine max Glyma03g39670.1 N 1.000
DDX41 Gorilla gorilla ENSGGOG00000014484 N 0.833
78123 Helobdella robusta 78123 N 0.833
DDX41 Homo sapiens ENSG00000183258 N 0.833
XP_002160326.1 Hydra magnipapillata XP_002160326.1 N 0.778
ISCW016533 Ixodes scapularis ISCW016533 N 0.833
fgenesh2_pg.C_sca_40000169 Lottia gigantea fgenesh2_pg.C_sca_40000169 N 0.833
chr2.LjT16G06.70.nd Lotus japonicus chr2.LjT16G06.70.nd N 1.000
DDX41 Loxodonta africana ENSLAFG00000026418 N 0.833
DDX41 Macaca mulatta ENSMMUG00000016911 N 0.833
DDX41 Macropus eugenii ENSMEUG00000014375 N 0.778
cassava23081.valid.m1 Manihot esculenta cassava23081.valid.m1 N 1.000
cassava23082.valid.m1 Manihot esculenta cassava23082.valid.m1 N 1.000
Medtr1g121690 Medicago truncatula Medtr1g121690 N 1.000
Medtr1g122060 Medicago truncatula Medtr1g122060 N 1.000
DDX41 Meleagris gallopavo ENSMGAG00000004050 N 0.833
DDX41 Microcebus murinus ENSMICG00000007919 N 0.833
mgf002732m Mimulus guttatus mgf002732m N 1.000
fgenesh1_pg.scaffold_24000032 Monosiga brevicollis fgenesh1_pg.scaffold_24000032 N 0.722
estExt_Genewise1Plus.C_12358 Mucor circinelloides estExt_Genewise1Plus.C_12358 N 0.778
Ddx41 Mus musculus ENSMUSG00000021494 N 0.833
DDX41 Myotis lucifugus ENSMLUG00000006610 N 0.833
nasonia_NCBI_hmm412924 Nasonia vitripennis nasonia_NCBI_hmm412924 N 0.778
DDX41 Ochotona princeps ENSOPRG00000016604 N 0.833
SNAPOd2T00004274001 Oikopleura dioica SNAPOd2T00004274001 N 0.778
DDX41 Ornithorhynchus anatinus ENSOANG00000009671 N 0.833
BGIOSIBCE005629 Oryza indica BGIOSIBCE005629 N 0.889
LOC_Os02g05660 Oryza sativa LOC_Os02g05660 N 0.889
DDX41 Oryzias latipes ENSORLG00000006688 N 0.778
DDX41 Otolemur garnettii ENSOGAG00000011123 N 0.833
DDX41 Pan troglodytes ENSPTRG00000017589 N 0.833
PDK_20s1987451g001 Phoenix dactylifera PDK_20s1987451g001 N 0.944
fgeneshPB_pg.72__34 Phycomyces blakesleeanus fgeneshPB_pg.72__34 N 0.778
ENSPPYG00000016097 Pongo pygmaeus ENSPPYG00000016097 N 0.833
POPTR_0015s03500 Populus trichocarpa POPTR_0015s03500 N 0.889
DDX41 Procavia capensis ENSPCAG00000009363 N 0.833
ppa003295m Prunus persica ppa003295m N 1.000
DDX41 Pteropus vampyrus ENSPVAG00000007784 N 0.833
Ddx41 Rattus norvegicus ENSRNOG00000012771 N 0.833
RGD1559513 Rattus norvegicus ENSRNOG00000024826 N 0.833
RO3G_01360 Rhizopus oryzae RO3G_01360 N 0.778
29171.m000268 Ricinus communis 29171.m000268 N 1.000
SB01G035760 Sorghum bicolor Sb01g035760 N 0.889
DDX41 Spermophilus tridecemlineatus ENSSTOG00000003171 N 0.833
estExt_Genewise1.C_10991 Sporobolomyces roseus estExt_Genewise1.C_10991 N 0.722
DDX41 Taeniopygia guttata ENSTGUG00000000413 N 0.833
DDX41 Takifugu rubripes ENSTRUG00000004445 N 0.778
DDX41 Tetraodon nigroviridis ENSTNIG00000008991 N 0.778
DDX41 Tupaia belangeri ENSTBEG00000002862 N 0.833
GSVIVG00017454001 Vitis vinifera GSVIVG00017454001 N 1.000
fam193b Xenopus tropicalis ENSXETG00000007238 N 0.833
GRMZM2G043724 Zea mays GRMZM2G043724 N 0.889