CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Genemark.12122_g
(
Serpula lacrymans
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
Genemark.12122_g
T15689_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Genemark.12122_g
CCHC ZF
239
256
FTCFNCGQEGHMAQDCRN
Links
Other
CCHC ZF
family RBPs
Other
Serpula lacrymans
RBPs
50 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GLRG_09758
Colletotrichum graminicola
GLRG_09758
N
0.000
FGSG_08365
Fusarium graminearum
FGSG_08365
N
0.000
FVEG_02326
Fusarium verticillioides
FVEG_02326
N
0.000
MGG_00444
Magnaporthe oryzae
MGG_00444
N
0.000
estExt_fgenesh1_pm.C_sca_2_chr3_3_00106
Nectria haematococca
estExt_fgenesh1_pm.C_sca_2_chr3_3_00106
N
0.000
estExt_Genewise1.C_31032
Trichoderma atroviride
estExt_Genewise1.C_31032
N
0.000
estExt_GeneWisePlus.C_80814
Trichoderma reesei
estExt_GeneWisePlus.C_80814
N
0.000
estExt_Genewise1.C_60393
Trichoderma virens
estExt_Genewise1.C_60393
N
0.000