CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MGG_00444
(
Magnaporthe oryzae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
MGG_00444
T29737_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
MGG_00444T0
RRM
5
70
VTVKNISAKTDDKEIRDFFAFCGKITDLQVNTEGETKSATVIFEKETAAKTALLLNNTQLGPSHIS
Links
Other
RRM
family RBPs
Other
Magnaporthe oryzae
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh1_kg.C_90119
Cryphonectria parasitica
estExt_fgenesh1_kg.C_90119
N
0.833
estExt_GeneWisePlus.C_80814
Trichoderma reesei
estExt_GeneWisePlus.C_80814
N
0.773
VDAG_07347
Verticillium dahliae
VDAG_07347
N
0.758
estExt_Genewise1.C_31032
Trichoderma atroviride
estExt_Genewise1.C_31032
N
0.758
VDBG_09184
Verticillium albo atrum
VDBG_09184
N
0.758
estExt_Genewise1.C_60393
Trichoderma virens
estExt_Genewise1.C_60393
N
0.742
GLRG_09758
Colletotrichum graminicola
GLRG_09758
N
0.727
FVEG_02326
Fusarium verticillioides
FVEG_02326
N
0.727
FOXG_03456
Fusarium oxysporum
FOXG_03456
N
0.727
estExt_fgenesh1_pm.C_sca_2_chr3_3_00106
Nectria haematococca
estExt_fgenesh1_pm.C_sca_2_chr3_3_00106
N
0.727