ENSCJAG00000033824 (Callithrix jacchus)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSCJAG00000033824 T16795_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.915
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.915
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.847
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.847
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.847
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.833
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000040310 CSD 14 84

Links

Other CSD family RBPs
Other Callithrix jacchus RBPs

193 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BRADI5G02425 Brachypodium distachyon BRADI5G02425 N 0.000
fgenesh1_pg.C_scaffold_539000016 Capitella teleta fgenesh1_pg.C_scaffold_539000016 N 0.000
fgenesh1_pg.C_scaffold_3090000001 Capitella teleta fgenesh1_pg.C_scaffold_3090000001 N 0.000
CHGG_00235 Chaetomium globosum CHGG_00235 N 0.000
CHGG_06816 Chaetomium globosum CHGG_06816 N 0.000
Minc03468 Meloidogyne incognita Minc03468 N 0.000
Minc12116 Meloidogyne incognita Minc12116 N 0.000
LOC_Os03g22100 Oryza sativa LOC_Os03g22100 N 0.000
LOC_Os02g33340 Oryza sativa LOC_Os02g33340 N 0.000
LOC_Os09g03060 Oryza sativa LOC_Os09g03060 N 0.000
fgenesh1_pg.C_scaffold_9000406 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_9000406 N 0.000