fgenesh1_pg.C_scaffold_9000406 (Phanerochaete chrysosporium)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 fgenesh1_pg.C_scaffold_9000406 T14070_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_9000406 CCHC ZF 216 233

Links

Other CCHC ZF family RBPs
Other Phanerochaete chrysosporium RBPs

27 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
fgenesh1_pg.C_scaffold_7000204 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_7000204 N 0.889
fgenesh1_pg.C_scaffold_2102000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_2102000001 N 0.722
fgenesh1_pg.C_scaffold_23000077 Phytophthora ramorum fgenesh1_pg.C_scaffold_23000077 N 0.722
fgenesh1_pg.C_scaffold_2072000002 Phytophthora ramorum fgenesh1_pg.C_scaffold_2072000002 N 0.722
fgenesh1_pg.C_scaffold_20000020 Phytophthora ramorum fgenesh1_pg.C_scaffold_20000020 N 0.722
fgenesh1_pg.C_scaffold_17378000001 Capitella teleta fgenesh1_pg.C_scaffold_17378000001 N 0.722
fgenesh1_pg.C_scaffold_2342000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_2342000001 N 0.722
fgenesh1_pg.C_scaffold_2352000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_2352000001 N 0.722
fgenesh1_pg.C_scaffold_6960000001 Capitella teleta fgenesh1_pg.C_scaffold_6960000001 N 0.722
fgenesh1_pg.C_scaffold_6000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_6000001 N 0.722
fgenesh1_pg.C_scaffold_3542000001 Capitella teleta fgenesh1_pg.C_scaffold_3542000001 N 0.722
fgenesh1_pg.C_scaffold_315000002 Phytophthora ramorum fgenesh1_pg.C_scaffold_315000002 N 0.722
fgenesh1_pg.C_scaffold_17000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_17000001 N 0.722
fgenesh1_pg.C_scaffold_159000006 Capitella teleta fgenesh1_pg.C_scaffold_159000006 N 0.722
LOC_Os06g43540 Oryza sativa LOC_Os06g43540 N 0.722
LOC_Os08g38640 Oryza sativa LOC_Os08g38640 N 0.722
LOC_Os05g36940 Oryza sativa LOC_Os05g36940 N 0.722
BRADI4G12955 Brachypodium distachyon BRADI4G12955 N 0.722
Glyma05g01960.1 Glycine max Glyma05g01960.1 N 0.722
cassava5289.m1 Manihot esculenta cassava5289.m1 N 0.722
fgenesh1_pg.C_scaffold_100000022 Capitella teleta fgenesh1_pg.C_scaffold_100000022 N 0.722
fgenesh1_pg.C_scaffold_15651000001 Capitella teleta fgenesh1_pg.C_scaffold_15651000001 N 0.722
fgenesh1_pg.C_scaffold_1590000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_1590000001 N 0.722
fgenesh1_pg.C_scaffold_135000007 Phytophthora ramorum fgenesh1_pg.C_scaffold_135000007 N 0.722
fgenesh1_pg.C_scaffold_1347000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_1347000001 N 0.722
fgenesh1_pg.C_scaffold_1242000001 Phytophthora ramorum fgenesh1_pg.C_scaffold_1242000001 N 0.722
fgenesh1_pg.C_scaffold_911000002 Phytophthora ramorum fgenesh1_pg.C_scaffold_911000002 N 0.722