CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Minc12116
(
Meloidogyne incognita
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
Minc12116
T16137_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Minc12116
CCHC ZF
1108
1125
RTCFNCGKAGHFARECNT
Links
Other
CCHC ZF
family RBPs
Other
Meloidogyne incognita
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Minc03468
Meloidogyne incognita
Minc03468
N
0.833
BRADI4G12955
Brachypodium distachyon
BRADI4G12955
N
0.778
ANIA_02865
Aspergillus nidulans
CADANIAG00010225
N
0.722
LOC_Os09g03060
Oryza sativa
LOC_Os09g03060
N
0.722