CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BC1G_07112
(
Botrytis cinerea
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
BC1G_07112
T17509_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
BC1T_07112
KH
187
250
VESISIESNLVGLIIGRQGENLRRVESETGCRVQFITGPDETGPFRTCKITGPRARRADAKAEI
BC1T_07112
KH
288
351
SMQIMVPDRTVGLIIGRGGETIRDLQERSGCHVNIVGEQKSVNGLRPVNLIGTREAAAMAKDLI
BC1T_07112
KH
399
461
DSIFVPSEAVGMIIGKGGETIKDMQNTTGCKINVTQSSGPGEVEREIGLVGSQQAIAAAKRAI
Links
Other
KH
family RBPs
Other
Botrytis cinerea
RBPs
21 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AB07224.1
Alternaria brassicicola
AB07224.1
N
0.731
estExt_Genewise1Plus.C_20565
Cochliobolus heterostrophus C5
estExt_Genewise1Plus.C_20565
N
0.725
GLRG_08153
Colletotrichum graminicola
GLRG_08153
N
0.792
estExt_fgenesh1_pg.C_20306
Cryphonectria parasitica
estExt_fgenesh1_pg.C_20306
N
0.743
FGSG_04349
Fusarium graminearum
FGSG_04349
N
0.749
FOXG_13887
Fusarium oxysporum
FOXG_13887
N
0.760
FVEG_11314
Fusarium verticillioides
FVEG_11314
N
0.760
MGG_12809
Magnaporthe oryzae
MGG_12809
N
0.740
estExt_Genewise1.C_70072
Myceliophthora thermophila
estExt_Genewise1.C_70072
N
0.776
gw1.11.93.1
Nectria haematococca
gw1.11.93.1
N
0.762
NCU09352
Neurospora crassa
NCU09352
N
0.791
estExt_Genewise1.C_100053
Neurospora discreta
estExt_Genewise1.C_100053
N
0.796
estExt_Genewise1Plus.C_230153
Neurospora tetrasperma
estExt_Genewise1Plus.C_230153
N
0.791
Pa_3_11410
Podospora anserina
Pa_3_11410
N
0.750
PTRG_06035
Pyrenophora tritici repentis
PTRG_06035
N
0.731
SS1G_05361
Sclerotinia sclerotiorum
SS1G_05361
N
1.000
estExt_fgenesh2_kg.C_60272
Thielavia terrestris
estExt_fgenesh2_kg.C_60272
N
0.745
e_gw1.5.255.1
Trichoderma atroviride
e_gw1.5.255.1
N
0.772
fgenesh5_pg.C_scaffold_20000146
Trichoderma reesei
fgenesh5_pg.C_scaffold_20000146
N
0.776
e_gw1.12.113.1
Trichoderma virens
e_gw1.12.113.1
N
0.781
VDAG_01251
Verticillium dahliae
VDAG_01251
N
0.730