CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PCBP4
(
Canis familiaris
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSCAFG00000010019
T18467_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
Pcbp3
M188_0.6
Mus musculus
UUUYCC
RNAcompete
Ray et al.(2013)
RNCMPT00215
0.742
pcbp2
M211_0.6
Danio rerio
WWUCCC
RNAcompete
Ray et al.(2013)
RNCMPT00246
0.716
PCBP2
M043_0.6
Homo sapiens
CCYYCCH
RNAcompete
Ray et al.(2013)
RNCMPT00044
0.716
Pcbp1
M207_0.6
Mus musculus
CYUUCC
RNAcompete
Ray et al.(2013)
RNCMPT00239
0.705
PCBP1
M177_0.6
Homo sapiens
CCWWHCC
RNAcompete
Ray et al.(2013)
RNCMPT00186
0.705
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCAFP00000014750
KH
19
79
TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMI
ENSCAFP00000014750
KH
103
166
TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQI
ENSCAFP00000014750
KH
243
305
SQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLI
Links
Other
KH
family RBPs
Other
Canis familiaris
RBPs
99 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ZC3H10
Anolis carolinensis
ENSACAG00000005020
I
0.000
A5D7H8_BOVIN
Bos taurus
ENSBTAG00000009542
I
0.000
LOC100410117
Callithrix jacchus
ENSCJAG00000011803
I
0.000
ZC3H10
Canis familiaris
ENSCAFG00000000104
I
0.000
ZC3H10
Cavia porcellus
ENSCPOG00000002916
I
0.000
ZC3H10
Dasypus novemcinctus
ENSDNOG00000000333
I
0.000
Zc3h10
Dipodomys ordii
ENSDORG00000001081
I
0.000
LOC100059294
Equus caballus
ENSECAG00000013003
I
0.000
ZC3H10
Homo sapiens
ENSG00000135482
D
0.000
ZC3H10
Loxodonta africana
ENSLAFG00000014817
I
0.000
ZC3H10
Macaca mulatta
ENSMMUG00000021084
I
0.000
ZC3H10
Macropus eugenii
ENSMEUG00000001222
I
0.000
Zc3h10
Mus musculus
ENSMUSG00000039810
I
0.000
ZC3H10
Oryctolagus cuniculus
ENSOCUG00000017349
I
0.000
ZC3H10
Pan troglodytes
ENSPTRG00000005078
I
0.000
ENSPPYG00000004644
Pongo pygmaeus
ENSPPYG00000004644
I
0.000
ZC3H10
Procavia capensis
ENSPCAG00000005636
I
0.000
ZC3H10
Pteropus vampyrus
ENSPVAG00000007566
I
0.000
Zc3h10
Rattus norvegicus
ENSRNOG00000040281
I
0.000
ZC3H10
Sorex araneus
ENSSARG00000007208
I
0.000
ZC3H10
Spermophilus tridecemlineatus
ENSSTOG00000007753
I
0.000
ZC3H10
Sus scrofa
ENSSSCG00000000378
I
0.000
ZC3H10
Tursiops truncatus
ENSTTRG00000016415
I
0.000
ZC3H10
Vicugna pacos
ENSVPAG00000009524
I
0.000
AAH73459
Xenopus laevis
AAH73459
I
0.000
AAI27425
Xenopus laevis
AAI27425
I
0.000
zc3h10
Xenopus tropicalis
ENSXETG00000009476
I
0.000