CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PCBP4
(
Cavia porcellus
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSCPOG00000014617
T18582_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
Pcbp3
M188_0.6
Mus musculus
UUUYCC
RNAcompete
Ray et al.(2013)
RNCMPT00215
0.747
PCBP2
M043_0.6
Homo sapiens
CCYYCCH
RNAcompete
Ray et al.(2013)
RNCMPT00044
0.711
pcbp2
M211_0.6
Danio rerio
WWUCCC
RNAcompete
Ray et al.(2013)
RNCMPT00246
0.711
Pcbp1
M207_0.6
Mus musculus
CYUUCC
RNAcompete
Ray et al.(2013)
RNCMPT00239
0.700
PCBP1
M177_0.6
Homo sapiens
CCWWHCC
RNAcompete
Ray et al.(2013)
RNCMPT00186
0.700
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCPOP00000013171
KH
19
79
TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMI
ENSCPOP00000013171
KH
103
166
TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQI
ENSCPOP00000013171
KH
243
305
SQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHITITGSPVSIALAQYLI
Links
Other
KH
family RBPs
Other
Cavia porcellus
RBPs
96 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CJA14711
Caenorhabditis japonica
CJA14711
N
0.000
PK11721.1
Cannabis sativa
PK11721.1
N
0.000
fgenesh1_pg.C_scaffold_1459000002
Capitella teleta
fgenesh1_pg.C_scaffold_1459000002
N
0.000
Cucsa.265830
Cucumis sativus
Cucsa.265830
N
0.000
Glyma13g21780.1
Glycine max
Glyma13g21780.1
N
0.000
Glyma02g36930.1
Glycine max
Glyma02g36930.1
N
0.000
Pa_3_11180
Podospora anserina
Pa_3_11180
N
0.000
SPPG_00438
Spizellomyces punctatus
SPPG_00438
N
0.000
SPPG_08808
Spizellomyces punctatus
SPPG_08808
N
0.000
SPPG_08805
Spizellomyces punctatus
SPPG_08805
N
0.000
SPPG_08561
Spizellomyces punctatus
SPPG_08561
N
0.000
SPPG_01770
Spizellomyces punctatus
SPPG_01770
N
0.000
SPPG_03316
Spizellomyces punctatus
SPPG_03316
N
0.000
SPPG_03725
Spizellomyces punctatus
SPPG_03725
N
0.000
SPPG_03727
Spizellomyces punctatus
SPPG_03727
N
0.000
SPPG_06303
Spizellomyces punctatus
SPPG_06303
N
0.000
SPPG_08320
Spizellomyces punctatus
SPPG_08320
N
0.000
SPPG_08560
Spizellomyces punctatus
SPPG_08560
N
0.000
XP_001191181.1
Strongylocentrotus purpuratus
XP_001191181.1
N
0.000
XP_001201402.1
Strongylocentrotus purpuratus
XP_001201402.1
N
0.000