pum (Drosophila melanogaster)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 FBgn0003165 T24305_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
pum
M285_0.6		 Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		(Direct)
pum
M045_0.6		 Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		(Direct)
pum
M097_0.6		 Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		(Direct)
pum
M098_0.6		 Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		(Direct)
pum
M099_0.6		 Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		(Direct)
pum
M100_0.6		 Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		(Direct)
pum
M101_0.6		 Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.809
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.809
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.809
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.806
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.806
PUM1
M283_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		0.781
PUM1
M255_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		0.781
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M045_0.6 PUF 51 85
M045_0.6 PUF 87 120
M045_0.6 PUF 123 157
M045_0.6 PUF 159 193
M045_0.6 PUF 195 229
M045_0.6 PUF 231 265
M045_0.6 PUF 267 301
M045_0.6 PUF 308 341
M097_0.6 PUF 21 55
M097_0.6 PUF 57 90
M097_0.6 PUF 93 127
M097_0.6 PUF 129 163
M097_0.6 PUF 165 199
M097_0.6 PUF 201 235
M097_0.6 PUF 237 271
M097_0.6 PUF 278 311
M098_0.6 PUF 21 55
M098_0.6 PUF 57 90
M098_0.6 PUF 93 127
M098_0.6 PUF 129 163
M098_0.6 PUF 165 199
M098_0.6 PUF 201 235
M098_0.6 PUF 237 271
M098_0.6 PUF 278 311
M099_0.6 PUF 21 55
M099_0.6 PUF 57 90
M099_0.6 PUF 93 127
M099_0.6 PUF 129 163
M099_0.6 PUF 165 199
M099_0.6 PUF 201 235
M099_0.6 PUF 237 271
M099_0.6 PUF 278 311
M100_0.6 PUF 21 55
M100_0.6 PUF 57 90
M100_0.6 PUF 93 127
M100_0.6 PUF 129 163
M100_0.6 PUF 165 199
M100_0.6 PUF 201 235
M100_0.6 PUF 237 271
M100_0.6 PUF 278 311
M101_0.6 PUF 21 55
M101_0.6 PUF 57 90
M101_0.6 PUF 93 127
M101_0.6 PUF 129 163
M101_0.6 PUF 165 199
M101_0.6 PUF 201 235
M101_0.6 PUF 237 271
M101_0.6 PUF 278 311

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0081470 PUF 1111 1145
FBpp0081470 PUF 1147 1180
FBpp0081470 PUF 1183 1217
FBpp0081470 PUF 1219 1253
FBpp0081470 PUF 1255 1289
FBpp0081470 PUF 1291 1325
FBpp0081470 PUF 1327 1361
FBpp0081470 PUF 1368 1401
FBpp0081471 PUF 1111 1145
FBpp0081471 PUF 1147 1180
FBpp0081471 PUF 1183 1217
FBpp0081471 PUF 1219 1253
FBpp0081471 PUF 1255 1289
FBpp0081471 PUF 1291 1325
FBpp0081471 PUF 1327 1361
FBpp0081471 PUF 1368 1401
FBpp0081472 PUF 1111 1145
FBpp0081472 PUF 1147 1180
FBpp0081472 PUF 1183 1217
FBpp0081472 PUF 1219 1253
FBpp0081472 PUF 1255 1289
FBpp0081472 PUF 1291 1325
FBpp0081472 PUF 1327 1361
FBpp0081472 PUF 1368 1401
FBpp0081473 PUF 763 797
FBpp0081473 PUF 799 832
FBpp0081473 PUF 835 869
FBpp0081473 PUF 871 905
FBpp0081473 PUF 907 941
FBpp0081473 PUF 943 977
FBpp0081473 PUF 979 1013
FBpp0081473 PUF 1020 1053
FBpp0081474 PUF 513 547
FBpp0081474 PUF 549 582
FBpp0081474 PUF 585 619
FBpp0081474 PUF 621 655
FBpp0081474 PUF 657 691
FBpp0081474 PUF 693 727
FBpp0081474 PUF 729 763
FBpp0081474 PUF 770 803
FBpp0293727 PUF 503 537
FBpp0293727 PUF 539 572
FBpp0293727 PUF 575 609
FBpp0293727 PUF 611 645
FBpp0293727 PUF 647 681
FBpp0293727 PUF 683 717
FBpp0293727 PUF 719 753
FBpp0293727 PUF 760 793

Links

Other PUF family RBPs
Other Drosophila melanogaster RBPs

90 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
YGR250C Saccharomyces cerevisiae YGR250C N 0.000
Skud_Contig1999.8 Saccharomyces kudriavzevii Skud_Contig1999.8 N 0.000
9299_YGR250C Saccharomyces paradoxus 9299_YGR250C N 0.000