PUM1 (Homo sapiens)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 ENSG00000134644 T24199_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PUM1
M255_0.6		 Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		(Direct)
PUM1
M283_0.6		 Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.905
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.905
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.905
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.905
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.905
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.781
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.781
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.781
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.781
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.781
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.781
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.781
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000257075 PUF 848 882
ENSP00000257075 PUF 884 916
ENSP00000257075 PUF 920 954
ENSP00000257075 PUF 956 990
ENSP00000257075 PUF 992 1026
ENSP00000257075 PUF 1028 1062
ENSP00000257075 PUF 1064 1094
ENSP00000257075 PUF 1110 1141
ENSP00000362846 PUF 884 918
ENSP00000362846 PUF 920 952
ENSP00000362846 PUF 956 987
ENSP00000362846 PUF 994 1028
ENSP00000362846 PUF 1030 1064
ENSP00000362846 PUF 1066 1100
ENSP00000362846 PUF 1102 1132
ENSP00000362846 PUF 1148 1179
ENSP00000362847 PUF 585 619
ENSP00000362847 PUF 621 653
ENSP00000362847 PUF 657 689
ENSP00000362847 PUF 695 729
ENSP00000362847 PUF 731 765
ENSP00000362847 PUF 767 801
ENSP00000362847 PUF 803 833
ENSP00000362847 PUF 849 880
ENSP00000362852 PUF 849 883
ENSP00000362852 PUF 885 917
ENSP00000362852 PUF 921 952
ENSP00000362852 PUF 959 993
ENSP00000362852 PUF 995 1029
ENSP00000362852 PUF 1031 1065
ENSP00000362852 PUF 1067 1097
ENSP00000362852 PUF 1113 1144
ENSP00000362854 PUF 587 621
ENSP00000362854 PUF 623 655
ENSP00000362854 PUF 659 691
ENSP00000362854 PUF 697 731
ENSP00000362854 PUF 733 767
ENSP00000362854 PUF 769 803
ENSP00000362854 PUF 805 835
ENSP00000362854 PUF 851 882
ENSP00000391723 PUF 848 882
ENSP00000391723 PUF 884 916
ENSP00000391723 PUF 920 951
ENSP00000391723 PUF 958 992
ENSP00000391723 PUF 994 1028
ENSP00000391723 PUF 1030 1064
ENSP00000391723 PUF 1066 1096
ENSP00000391723 PUF 1112 1143
ENSP00000399440 PUF 704 738
ENSP00000399440 PUF 740 772
ENSP00000399440 PUF 776 807
ENSP00000399440 PUF 814 848
ENSP00000399440 PUF 850 884
ENSP00000399440 PUF 886 920
ENSP00000399440 PUF 922 952
ENSP00000399440 PUF 968 999
ENSP00000400141 PUF 789 823
ENSP00000400141 PUF 825 857
ENSP00000400141 PUF 861 895
ENSP00000400141 PUF 897 931
ENSP00000400141 PUF 933 967
ENSP00000400141 PUF 969 1003
ENSP00000400141 PUF 1005 1035
ENSP00000400141 PUF 1051 1082
ENSP00000401777 PUF 822 856
ENSP00000401777 PUF 858 890
ENSP00000401777 PUF 894 925
ENSP00000401777 PUF 932 966
ENSP00000401777 PUF 968 1002
ENSP00000401777 PUF 1004 1038
ENSP00000401777 PUF 1040 1070
ENSP00000401777 PUF 1086 1117

Links

Other PUF family RBPs
Other Homo sapiens RBPs

89 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Q3YAQ1_MACMU Macaca mulatta ENSMMUG00000013520 I 1.000
PUM1 Pan troglodytes ENSPTRG00000000453 I 1.000
ENSPPYG00000001621 Pongo pygmaeus ENSPPYG00000001621 I 1.000
LOC100415491 Callithrix jacchus ENSCJAG00000006035 I 1.000
PUM1 Bos taurus ENSBTAG00000018979 I 0.996
PUM1 Sus scrofa ENSSSCG00000003591 I 0.996
PUM1 Vicugna pacos ENSVPAG00000005902 I 0.996
Ame_R012380 Ailuropoda melanoleuca Ame_R012380 I 0.996
PUM1 Canis familiaris ENSCAFG00000011205 I 0.996
Pum1 Mus musculus ENSMUSG00000028580 I 0.993
Pum1 Rattus norvegicus ENSRNOG00000011709 I 0.993
PUM1 Loxodonta africana ENSLAFG00000003178 I 0.993
PUM1 Sorex araneus ENSSARG00000003055 I 0.993
PUM1 Erinaceus europaeus ENSEEUG00000003871 I 0.993
PUM1 Oryctolagus cuniculus ENSOCUG00000008641 I 0.989
PUM1 Equus caballus ENSECAG00000021369 I 0.989
PUM1 Tursiops truncatus ENSTTRG00000007436 I 0.985
PUM1 Pteropus vampyrus ENSPVAG00000005207 I 0.985
PUM1 Microcebus murinus ENSMICG00000007713 I 0.982
PUM1 Monodelphis domestica ENSMODG00000017067 I 0.971
PUM1 Anolis carolinensis ENSACAG00000000682 I 0.971
PUM1 Meleagris gallopavo ENSMGAG00000000724 I 0.971
PUM1_CHICK Gallus gallus ENSGALG00000000597 I 0.971
BAC57980 Xenopus laevis BAC57980 I 0.967
AAH80379 Xenopus laevis AAH80379 I 0.967
AAL14121 Xenopus laevis AAL14121 I 0.963
PUM1 Takifugu rubripes ENSTRUG00000013121 I 0.948
PUM1 Gasterosteus aculeatus ENSGACG00000005717 I 0.948
PUM1 Oryzias latipes ENSORLG00000011482 I 0.941
BAB20864 Xenopus laevis BAB20864 I 0.941
PUM1 Tetraodon nigroviridis ENSTNIG00000016983 I 0.930
PUM2 Oryctolagus cuniculus ENSOCUG00000017908 I 0.905
PUM2 Pan troglodytes ENSPTRG00000011692 I 0.905
PUM2 Callithrix jacchus ENSCJAG00000007450 I 0.905
Pum2 Mus musculus ENSMUSG00000020594 D 0.905
PUM2 Canis familiaris ENSCAFG00000003839 I 0.905
Ame_R002800 Ailuropoda melanoleuca Ame_R002800 I 0.905
PUM2 Gorilla gorilla ENSGGOG00000011374 I 0.905
PUM2 Homo sapiens ENSG00000055917 D 0.905
PUM2 Vicugna pacos ENSVPAG00000005056 I 0.905
PUM2 Loxodonta africana ENSLAFG00000009278 I 0.905
ENSOANG00000003230 Ornithorhynchus anatinus ENSOANG00000003230 I 0.902
PUM2 Sus scrofa ENSSSCG00000008600 I 0.902
PUM2 Equus caballus ENSECAG00000021930 I 0.902
PUM2 Bos taurus ENSBTAG00000011155 I 0.902
ENSPPYG00000012617 Pongo pygmaeus ENSPPYG00000012617 I 0.902
PUM2 Taeniopygia guttata ENSTGUG00000013149 I 0.902
Q2VB18_CHICK Gallus gallus ENSGALG00000016481 I 0.902
PUM2 Tupaia belangeri ENSTBEG00000008729 I 0.901
Pum2 Rattus norvegicus ENSRNOG00000006180 I 0.901
PUM2 Meleagris gallopavo ENSMGAG00000014040 I 0.901
PUM2 Cavia porcellus ENSCPOG00000007075 I 0.895
PUM2 Anolis carolinensis ENSACAG00000010491 I 0.893
PUM2 Tarsius syrichta ENSTSYG00000014463 I 0.883
PUM2 Takifugu rubripes ENSTRUG00000018167 I 0.879
PUM2 Tursiops truncatus ENSTTRG00000004887 I 0.879
PUM2 Gasterosteus aculeatus ENSGACG00000009670 I 0.875
pum2 Xenopus tropicalis ENSXETG00000008903 I 0.872
PUM2 Monodelphis domestica ENSMODG00000009811 I 0.871
PUM2 Oryzias latipes ENSORLG00000012611 I 0.868
XP_001187223.1 Strongylocentrotus purpuratus XP_001187223.1 I 0.817
XP_794621.2 Strongylocentrotus purpuratus XP_794621.2 I 0.817
e_gw.54.41.1 Nematostella vectensis e_gw.54.41.1 I 0.809
PASA_GEN_0800110 Daphnia pulex PASA_GEN_0800110 I 0.796
estExt_Genewise1Plus.C_4390035 Capitella teleta estExt_Genewise1Plus.C_4390035 I 0.795
PHUM490070 Pediculus humanus PHUM490070 I 0.791
estExt_Genewise1Plus.C_sca_670070 Lottia gigantea estExt_Genewise1Plus.C_sca_670070 I 0.789
nasonia_NCBI_hmm823294 Nasonia vitripennis nasonia_NCBI_hmm823294 I 0.785
GM26283 Drosophila sechellia FBgn0181138 I 0.781
pum Drosophila melanogaster FBgn0003165 D 0.781
CPIJ016844 Culex quinquefasciatus CPIJ016844 I 0.777
GG17394 Drosophila erecta FBgn0109620 I 0.777
CpipJ_CPIJ016844 Culex pipiens CpipJ_CPIJ016844 I 0.777
GE24797 Drosophila yakuba FBgn0241899 I 0.777
GF18428 Drosophila ananassae FBgn0095446 I 0.777
AAEL012420 Aedes aegypti AAEL012420 I 0.777
GK14049 Drosophila willistoni FBgn0216055 I 0.777
amel4_ncbi_hmm4895 Apis mellifera amel4_ncbi_hmm4895 I 0.775
GH15257 Drosophila grimshawi FBgn0122732 I 0.773
GI22503 Drosophila mojavensis FBgn0145231 I 0.773
GA27465-RA Drosophila pseudoobscura FBgn0248832 I 0.773
AGAP003914 Anopheles gambiae AGAP003914 I 0.773
GJ10105 Drosophila virilis FBgn0197393 I 0.770
DGIL_AUG5s1082g1t1 Acyrtosiphon pisum DGIL_AUG5s1082g1t1 I 0.766
BGIBMGA003401 Bombyx mori BGIBMGA003401 I 0.766
GL22345 Drosophila persimilis FBgn0159937 I 0.766
ENSCING00000003888 Ciona intestinalis ENSCING00000003888 I 0.764
e_gw1.9.429.1 Trichoplax adhaerens e_gw1.9.429.1 I 0.763