CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSCJAG00000002042
(
Callithrix jacchus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCJAG00000002042
T35476_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCJAP00000003679
RRM
106
167
MCGLPYRATENGICNFFFLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAVSKGKANMQHS
Links
Other
RRM
family RBPs
Other
Callithrix jacchus
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
cassava28473.m1
Manihot esculenta
cassava28473.m1
N
0.000
BGIOSIBCE007079
Oryza indica
BGIOSIBCE007079
N
0.000
LOC_Os02g29570
Oryza sativa
LOC_Os02g29570
N
0.000
LOC_Os08g23510
Oryza sativa
LOC_Os08g23510
N
0.000
LOC_Os09g09400
Oryza sativa
LOC_Os09g09400
N
0.000
PGTG_06776
Puccinia graminis
PGTG_06776
N
0.000
PGTG_13838
Puccinia graminis
PGTG_13838
N
0.000
PGTG_16818
Puccinia graminis
PGTG_16818
N
0.000
PGTG_16926
Puccinia graminis
PGTG_16926
N
0.000