CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Hnrnph3
(
Dipodomys ordii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSDORG00000011470
T36509_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDORP00000010783
RRM
113
180
VHMRGLPFRATENDIANFFTPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNNMQHRYIE
Links
Other
RRM
family RBPs
Other
Dipodomys ordii
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC100392844
Callithrix jacchus
ENSCJAG00000019154
N
0.985
HNRNPH1
Gasterosteus aculeatus
ENSGACG00000018352
I
0.824
ENSCHOG00000001614
Choloepus hoffmanni
ENSCHOG00000001614
N
0.809
ENSCAFG00000023462
Canis familiaris
ENSCAFG00000023462
N
0.794
HNRNPH1
Dasypus novemcinctus
ENSDNOG00000007173
N
0.779
HNRNPH3
Danio rerio
ENSDARG00000039466
I
0.779
HNRNPH1
Tetraodon nigroviridis
ENSTNIG00000008997
N
0.765
ENSDORG00000008260
Dipodomys ordii
ENSDORG00000008260
N
0.765
ENSCJAG00000002042
Callithrix jacchus
ENSCJAG00000002042
N
0.706