CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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HNRNPH1
(
Tetraodon nigroviridis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTNIG00000008997
T42062_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTNIP00000011851
RRM
109
174
VHMRGLPYRATETDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMRGFL
Links
Other
RRM
family RBPs
Other
Tetraodon nigroviridis
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
HNRNPH1
Dasypus novemcinctus
ENSDNOG00000007173
N
0.924
HNRNPH1
Gasterosteus aculeatus
ENSGACG00000018352
I
0.897
ENSCHOG00000001614
Choloepus hoffmanni
ENSCHOG00000001614
N
0.853
ENSCAFG00000023462
Canis familiaris
ENSCAFG00000023462
N
0.838
ENSCJAG00000002042
Callithrix jacchus
ENSCJAG00000002042
N
0.788
LOC100392844
Callithrix jacchus
ENSCJAG00000019154
N
0.779
ENSDORG00000008260
Dipodomys ordii
ENSDORG00000008260
N
0.779
Hnrnph3
Dipodomys ordii
ENSDORG00000011470
N
0.765