CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBM39
(
Dasypus novemcinctus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSDNOG00000025219
T36396_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDNOP00000015604
RRM
155
223
VFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPI
ENSDNOP00000015604
RRM
252
279
LYVGSLHFNITEDMLRGIFEPFGRXXXX
ENSDNOP00000015604
RRM
445
502
EIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMIT
Links
Other
RRM
family RBPs
Other
Dasypus novemcinctus
RBPs
31 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC_Os01g15690
Oryza sativa
LOC_Os01g15690
N
0.000
LOC_Os10g04074
Oryza sativa
LOC_Os10g04074
N
0.000
LOC_Os09g08340
Oryza sativa
LOC_Os09g08340
N
0.000
LOC_Os08g38640
Oryza sativa
LOC_Os08g38640
N
0.000
LOC_Os07g05430
Oryza sativa
LOC_Os07g05430
N
0.000
LOC_Os06g43540
Oryza sativa
LOC_Os06g43540
N
0.000
LOC_Os05g36940
Oryza sativa
LOC_Os05g36940
N
0.000
LOC_Os04g54450
Oryza sativa
LOC_Os04g54450
N
0.000
LOC_Os04g29380
Oryza sativa
LOC_Os04g29380
N
0.000
LOC_Os03g56530
Oryza sativa
LOC_Os03g56530
N
0.000
LOC_Os03g05850
Oryza sativa
LOC_Os03g05850
N
0.000
LOC_Os02g34030
Oryza sativa
LOC_Os02g34030
N
0.000
LOC_Os01g52000
Oryza sativa
LOC_Os01g52000
N
0.000
LOC_Os01g32630
Oryza sativa
LOC_Os01g32630
N
0.000
LOC_Os12g01090
Oryza sativa
LOC_Os12g01090
N
0.000