CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBM39
(
Dasypus novemcinctus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSDNOG00000025219
T36396_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDNOP00000015604
RRM
155
223
VFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPI
ENSDNOP00000015604
RRM
252
279
LYVGSLHFNITEDMLRGIFEPFGRXXXX
ENSDNOP00000015604
RRM
445
502
EIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMIT
Links
Other
RRM
family RBPs
Other
Dasypus novemcinctus
RBPs
31 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CNBG_0311
Cryptococcus neoformans
CNBG_0311
N
0.000
EDP45311.1
Malassezia globosa
EDP45311.1
N
0.000
estExt_Genewise1.C_80010
Melampsora laricis populina
estExt_Genewise1.C_80010
N
0.000
PGTG_06023
Puccinia graminis
PGTG_06023
N
0.000
PTTG_06790
Puccinia triticina
PTTG_06790
N
0.000