RBM39 (Echinops telfairi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSETEG00000016295 T36993_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSETEP00000013215 RRM 155 223
ENSETEP00000013215 RRM 252 322
ENSETEP00000013215 RRM 445 502

Links

Other RRM family RBPs
Other Echinops telfairi RBPs

43 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RBM39 Procavia capensis ENSPCAG00000008764 N 1.000
RBM39 Sus scrofa ENSSSCG00000007309 N 0.889
Rbm39 Rattus norvegicus ENSRNOG00000019848 N 0.889
RBM39 Pteropus vampyrus ENSPVAG00000014944 N 0.889
ENSPPYG00000010963 Pongo pygmaeus ENSPPYG00000010963 N 0.889
RBM39 Pan troglodytes ENSPTRG00000013449 N 0.889
RBM39 Homo sapiens ENSG00000131051 N 0.889
RBM39 Tarsius syrichta ENSTSYG00000005605 N 0.889
RBM39 Canis familiaris ENSCAFG00000008327 N 0.889
B0KWM7_CALJA Callithrix jacchus ENSCJAG00000017535 N 0.889
Q2HJD8_BOVIN Bos taurus ENSBTAG00000003949 N 0.889
Ame_R004270 Ailuropoda melanoleuca Ame_R004270 N 0.889
RBM39 Tursiops truncatus ENSTTRG00000017039 N 0.889
RBM39 Equus caballus ENSECAG00000013423 N 0.889
RBM39 Sorex araneus ENSSARG00000007673 N 0.889
Rbm39 Mus musculus ENSMUSG00000027620 N 0.889
RBM39 Microcebus murinus ENSMICG00000001668 N 0.889
B7NZJ5_RABIT Oryctolagus cuniculus ENSOCUG00000007050 N 0.889
RBM39 Loxodonta africana ENSLAFG00000010346 N 0.889
RBM39 Gallus gallus ENSGALG00000001550 N 0.884
RBM39 Taeniopygia guttata ENSTGUG00000003048 N 0.884
RBM39 Monodelphis domestica ENSMODG00000001557 N 0.880
RBM39 Meleagris gallopavo ENSMGAG00000001509 N 0.879
RBM39 Anolis carolinensis ENSACAG00000006436 N 0.879
RBM39 Gorilla gorilla ENSGGOG00000003950 N 0.864
rbm39 Xenopus tropicalis ENSXETG00000007434 N 0.854
AAH77813 Xenopus laevis AAH77813 N 0.848
AAH75146 Xenopus laevis AAH75146 N 0.843
RBM39 Cavia porcellus ENSCPOG00000014625 N 0.829
RBM39 Otolemur garnettii ENSOGAG00000011227 N 0.813
ENSCPOG00000021775 Cavia porcellus ENSCPOG00000021775 N 0.808
RBM23 Oryzias latipes ENSORLG00000009919 N 0.803
rbm39a Danio rerio ENSDARG00000011613 N 0.798
rbm39b Danio rerio ENSDARG00000041853 N 0.798
RBM23 Tetraodon nigroviridis ENSTNIG00000017904 N 0.793
RBM23 Oryzias latipes ENSORLG00000010370 N 0.788
RBM23 Takifugu rubripes ENSTRUG00000011352 N 0.788
RBM23 Gasterosteus aculeatus ENSGACG00000003376 N 0.783
RBM39 Dasypus novemcinctus ENSDNOG00000025219 N 0.773
RBM23 Gasterosteus aculeatus ENSGACG00000002797 N 0.772
RBM39 Tupaia belangeri ENSTBEG00000017320 N 0.749
RBM23 Tetraodon nigroviridis ENSTNIG00000005223 N 0.707
estExt_Genewise1.C_sca_90322 Lottia gigantea estExt_Genewise1.C_sca_90322 N 0.702