CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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XR_011984.1
(
Macaca mulatta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMMUG00000011640
T38889_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPA1
M022_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00022
0.803
HNRNPA1
M312_0.6
Homo sapiens
Sequence logo not available
UAGGGW
RIP-chip
Cook et al.(2011)
560_17925491
0.803
HNRNPA1
M271_0.6
Homo sapiens
UAGGGW
SELEX
Cook et al.(2011)
23_7510636
0.803
HNRNPA1L2
M023_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00023
0.782
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMMUP00000015274
RRM
10
77
LFIGGLSFETTGESLRSHFEQWRMLRDCVVMRNPNTKHARGFGFVTYATVEEVDAAMNARPHKVDGRV
ENSMMUP00000015274
RRM
99
166
IFVGGIKEDTEEHHLRDYFEQGKIEVIEIRTDQGSVMKRDFAFVTFDDDDSVDKIVIQKYTVNDHSCE
Links
Other
RRM
family RBPs
Other
Macaca mulatta
RBPs
231 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GF11342
Drosophila ananassae
FBgn0088382
N
0.000
GG21791
Drosophila erecta
FBgn0113969
N
0.000
GH20755
Drosophila grimshawi
FBgn0128218
N
0.000
eIF3-S9
Drosophila melanogaster
FBgn0034237
N
0.000
GI20840
Drosophila mojavensis
FBgn0143574
N
0.000
GL11461
Drosophila persimilis
FBgn0149070
N
0.000
GA24735-RA
Drosophila pseudoobscura
FBgn0246121
N
0.000
GM21793
Drosophila sechellia
FBgn0176671
N
0.000
GD11284
Drosophila simulans
FBgn0183033
N
0.000
GJ20575
Drosophila virilis
FBgn0207714
N
0.000
GK21404
Drosophila willistoni
FBgn0223396
N
0.000
GE11867
Drosophila yakuba
FBgn0229653
N
0.000