CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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G3BP2
(
Oryzias latipes
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSORLG00000007012
T40144_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
G3BP2
M021_0.6
Homo sapiens
AGGAUDR
RNAcompete
Ray et al.(2013)
RNCMPT00021
0.925
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSORLP00000008809
RRM
226
292
LFVGNLPHDIDENELKEFFKTYGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQKILGAKPIMFRGE
Links
Other
RRM
family RBPs
Other
Oryzias latipes
RBPs
91 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
gw1.11.214.1
Batrachochytrium dendrobatidis
gw1.11.214.1
N
0.000
e_gw1.8.125.1
Emiliania huxleyi
e_gw1.8.125.1
N
0.000
gw1.198.122.1
Physcomitrella patens
gw1.198.122.1
N
0.000
estExt_fgenesh2_pg.C_120136
Selaginella moellendorfii
estExt_fgenesh2_pg.C_120136
N
0.000