CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBM42
(
Pteropus vampyrus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSPVAG00000012815
T40941_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
RBM42
M142_0.6
Homo sapiens
AACUAMG
RNAcompete
Ray et al.(2013)
RNCMPT00151
1.000
ENSXETG00000017599
M237_0.6
Xenopus tropicalis
WACUAC
RNAcompete
Ray et al.(2013)
RNCMPT00282
0.958
CG2931
M138_0.6
Drosophila melanogaster
DACUAAG
RNAcompete
Ray et al.(2013)
RNCMPT00147
0.704
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPVAP00000012084
RRM
380
450
IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIK
Links
Other
RRM
family RBPs
Other
Pteropus vampyrus
RBPs
110 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GF13242
Drosophila ananassae
FBgn0090274
N
0.000
GG21958
Drosophila erecta
FBgn0114136
N
0.000
GH22714
Drosophila grimshawi
FBgn0130171
N
0.000
Tab2
Drosophila melanogaster
FBgn0086358
N
0.000
GI18499
Drosophila mojavensis
FBgn0141238
N
0.000
GA20335-RA
Drosophila pseudoobscura
FBgn0080330
N
0.000
GM21946
Drosophila sechellia
FBgn0176823
N
0.000
GD11443
Drosophila simulans
FBgn0183192
N
0.000
GJ21362
Drosophila virilis
FBgn0208490
N
0.000
GK10734
Drosophila willistoni
FBgn0212746
N
0.000
GE12037
Drosophila yakuba
FBgn0229811
N
0.000