CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Brunol5
(
Rattus norvegicus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSRNOG00000004695
T41034_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000057932
RRM
9
78
LFVGQIPRHLHEQDLKPLFEQFGRIYELTVLKDPHTGVHKGCAFLTYCARDSAIKAQTALHEQKTLPGMA
ENSRNOP00000057932
RRM
98
166
LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGAS
Links
Other
RRM
family RBPs
Other
Rattus norvegicus
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CELF6
Canis familiaris
ENSCAFG00000017695
N
0.813
NCBI_GNO_7600086
Daphnia pulex
NCBI_GNO_7600086
N
0.741
CELF5
Gallus gallus
ENSGALG00000017694
N
0.777
BRUNOL5
Homo sapiens
ENSG00000161082
D
0.971
Celf5
Mus musculus
ENSMUSG00000034818
N
1.000
CELF3
Pan troglodytes
ENSPTRG00000001293
I
0.799
CELF4
Pan troglodytes
ENSPTRG00000009982
N
0.820
CELF5
Pan troglodytes
ENSPTRG00000010259
I
0.914
ENSPPYG00000009118
Pongo pygmaeus
ENSPPYG00000009118
I
0.820