CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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G3BP1
(
Tupaia belangeri
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTBEG00000004386
T41717_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
G3BP1
M302_0.6
Homo sapiens
Sequence logo not available
ACCCMYMSGCMS
SELEX
Cook et al.(2011)
432_11604510
0.984
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTBEP00000003789
RRM
224
287
LFIGNLPHEVDKSELKDFFQNYGNVVELRINSGGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGE
Links
Other
RRM
family RBPs
Other
Tupaia belangeri
RBPs
87 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PK02111.1
Cannabis sativa
PK02111.1
N
0.000
Glyma09g17080.1
Glycine max
Glyma09g17080.1
N
0.000
Glyma02g29190.1
Glycine max
Glyma02g29190.1
N
0.000
MDP0000340057
Malus x domestica
MDP0000340057
N
0.000
Medtr1g137330
Medicago truncatula
Medtr1g137330
N
0.000
Medtr8g129780
Medicago truncatula
Medtr8g129780
N
0.000
mgf009918m
Mimulus guttatus
mgf009918m
N
0.000
e_gw1.10.335.1
Mucor circinelloides
e_gw1.10.335.1
N
0.000
B9HW06_POPTR
Populus trichocarpa
POPTR_0010s24120
N
0.000
ppa025985m
Prunus persica
ppa025985m
N
0.000
29428.m000321
Ricinus communis
29428.m000321
N
0.000
GSVIVG00021851001
Vitis vinifera
GSVIVG00021851001
N
0.000