B9HW06_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0010s24120 T45608_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0010s24120.1 RRM 107 177

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

23 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29428.m000321 Ricinus communis 29428.m000321 N 0.915
cassava18017.valid.m1 Manihot esculenta cassava18017.valid.m1 N 0.859
ppa025985m Prunus persica ppa025985m N 0.859
Medtr8g129780 Medicago truncatula Medtr8g129780 N 0.845
Medtr1g137330 Medicago truncatula Medtr1g137330 N 0.845
GSVIVG00021851001 Vitis vinifera GSVIVG00021851001 N 0.817
mgf009918m Mimulus guttatus mgf009918m N 0.817
MDP0000340057 Malus x domestica MDP0000340057 N 0.817
Glyma09g17080.1 Glycine max Glyma09g17080.1 N 0.817
Glyma02g29190.1 Glycine max Glyma02g29190.1 N 0.817
LOC_Os08g31810 Oryza sativa LOC_Os08g31810 N 0.761
PK02111.1 Cannabis sativa PK02111.1 N 0.761
XM_002871058.1 Arabidopsis lyrata scaffold_600404.1 N 0.746
Cucsa.364800 Cucumis sativus Cucsa.364800 N 0.746
AT5G04600 Arabidopsis thaliana AT5G04600-TAIR-G N 0.746
GRMZM2G056350 Zea mays GRMZM2G056350 N 0.746
RO3G_08088 Rhizopus oryzae RO3G_08088 N 0.732
e_gw1.10.335.1 Mucor circinelloides e_gw1.10.335.1 N 0.732
Sb03g045720 Sorghum bicolor Sb03g045720 N 0.732
CC1G_06273 Coprinopsis cinerea CC1G_06273 N 0.718
gw1.198.122.1 Physcomitrella patens gw1.198.122.1 N 0.718
DEHA0A05764g Debaryomyces hansenii DEHA0A05764g N 0.704
BRADI3G35650 Brachypodium distachyon BRADI3G35650 N 0.704