CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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pab-2
(
Caenorhabditis elegans
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
F18H3.3
T42971_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
F18H3.3a.1
RRM
59
129
LYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMR
F18H3.3a.1
RRM
147
216
IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVY
F18H3.3a.1
RRM
240
309
VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCK
F18H3.3a.1
RRM
345
414
LYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLY
F18H3.3a.2
RRM
59
129
LYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMR
F18H3.3a.2
RRM
147
216
IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVY
F18H3.3a.2
RRM
240
309
VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCK
F18H3.3a.2
RRM
345
414
LYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLY
F18H3.3a.3
RRM
59
129
LYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMR
F18H3.3a.3
RRM
147
216
IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVY
F18H3.3a.3
RRM
240
309
VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCK
F18H3.3a.3
RRM
345
414
LYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLY
F18H3.3a.4
RRM
59
129
LYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMR
F18H3.3a.4
RRM
147
216
IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVY
F18H3.3a.4
RRM
240
309
VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCK
F18H3.3a.4
RRM
345
414
LYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLY
F18H3.3b
RRM
59
129
LYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMR
F18H3.3b
RRM
147
216
IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVY
F18H3.3b
RRM
240
309
VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCK
F18H3.3b
RRM
345
414
LYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLY
Links
Other
RRM
family RBPs
Other
Caenorhabditis elegans
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GF20968
Drosophila ananassae
FBgn0097973
I
0.000
GG17637
Drosophila erecta
FBgn0109859
I
0.000
GH24172
Drosophila grimshawi
FBgn0131628
I
0.000
Sxl
Drosophila melanogaster
FBgn0003659
D
0.000
GI21573
Drosophila mojavensis
FBgn0144303
I
0.000
GL26885
Drosophila persimilis
FBgn0164466
I
0.000
GA22653-RA
Drosophila pseudoobscura
FBgn0244056
I
0.000
Sxl
Drosophila sechellia
FBgn0043405
I
0.000
GD16553
Drosophila simulans
FBgn0188158
N
0.000
Sxl
Drosophila virilis
FBgn0016470
I
0.000
GK16445
Drosophila willistoni
FBgn0218447
I
0.000
GE17544
Drosophila yakuba
FBgn0235003
I
0.000