CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GJ23196
(
Drosophila virilis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0210298
T44122_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0237613
RRM
161
239
IFVGNLPINTKRVQLVRLLQPFGTVHSIRLRTAGGKQLFKHKQRKGAGSLNAYVVLDSAVIAEKALALNGTEFKENHLR
FBpp0237613
RRM
268
336
VFVGNLKYTASEQKLREIFSSCGEIDYIRCLQDGDKGCKGVAYVCFQKPDAVGLALELNETLLDDRPIH
Links
Other
RRM
family RBPs
Other
Drosophila virilis
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GF17498
Drosophila ananassae
FBgn0094516
N
0.804
GG21761
Drosophila erecta
FBgn0113939
N
0.858
GH17992
Drosophila grimshawi
FBgn0125460
N
0.885
GH22238
Drosophila grimshawi
FBgn0129699
N
0.885
CG12288
Drosophila melanogaster
FBgn0032620
N
0.851
GI10515
Drosophila mojavensis
FBgn0133279
N
0.892
GL23520
Drosophila persimilis
FBgn0161110
N
0.872
GA27287-RA
Drosophila pseudoobscura
FBgn0248655
N
0.872
GM17146
Drosophila sechellia
FBgn0172057
N
0.858
GD21886
Drosophila simulans
FBgn0193303
N
0.851
GK12898
Drosophila willistoni
FBgn0214907
N
0.797
GE13151
Drosophila yakuba
FBgn0230847
N
0.851