CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CG12288
(
Drosophila melanogaster
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0032620
T43051_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0080510
RRM
157
235
VFVGNLPINTKRVQLVKLFQPYGLVQSIRLRTAGGKQLFKHKQRKVAGSLNAYVVLEKPEIAQQALALNGSEFKENHLR
FBpp0080510
RRM
262
330
IFVGSLKYSATEEQLREIFSSCGEIDYIRCLQDGDKGCKGVAYVCFQKPDAVGLALELNQTLLDDRPIN
Links
Other
RRM
family RBPs
Other
Drosophila melanogaster
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GM17146
Drosophila sechellia
FBgn0172057
N
0.980
GD21886
Drosophila simulans
FBgn0193303
N
0.973
GE13151
Drosophila yakuba
FBgn0230847
N
0.973
GG21761
Drosophila erecta
FBgn0113939
N
0.946
GA27287-RA
Drosophila pseudoobscura
FBgn0248655
N
0.878
GL23520
Drosophila persimilis
FBgn0161110
N
0.878
GJ23196
Drosophila virilis
FBgn0210298
N
0.851
GI10515
Drosophila mojavensis
FBgn0133279
N
0.831
GF17498
Drosophila ananassae
FBgn0094516
N
0.831
GH17992
Drosophila grimshawi
FBgn0125460
N
0.811
GK12898
Drosophila willistoni
FBgn0214907
N
0.811
GH22238
Drosophila grimshawi
FBgn0129699
N
0.811