CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GH22238
(
Drosophila grimshawi
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0129699
T43538_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0156144
RRM
167
245
IFIGNLPINTKRVQLVRLLQPFGTVNSIRLRTAGGKHLFKHKQRKEAGSLNAYVVLNSAQVAEKALALNGTEFKENHLR
FBpp0156144
RRM
276
344
IFVGNLKYSANEEKLREIFSSCGEIDYIRCLHDGERGCKGVAYVCFQQPDAVGLALELNETMLDERPIH
Links
Other
RRM
family RBPs
Other
Drosophila grimshawi
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GH17992
Drosophila grimshawi
FBgn0125460
N
1.000
GJ23196
Drosophila virilis
FBgn0210298
N
0.885
GA27287-RA
Drosophila pseudoobscura
FBgn0248655
N
0.838
GI10515
Drosophila mojavensis
FBgn0133279
N
0.838
GL23520
Drosophila persimilis
FBgn0161110
N
0.838
GM17146
Drosophila sechellia
FBgn0172057
N
0.818
GG21761
Drosophila erecta
FBgn0113939
N
0.818
CG12288
Drosophila melanogaster
FBgn0032620
N
0.811
GD21886
Drosophila simulans
FBgn0193303
N
0.811
GE13151
Drosophila yakuba
FBgn0230847
N
0.811
GF17498
Drosophila ananassae
FBgn0094516
N
0.791
GK12898
Drosophila willistoni
FBgn0214907
N
0.777