CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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e_gw1.6.664.1
(
Selaginella moellendorfii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
e_gw1.6.664.1
T50088_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw1.6.664.1
RRM
309
372
LEEEVASECSKFGVVTSVLIFEITEHDYAPTEAVRIFVQFERADQASKALADLDGRFFGGRVVR
Links
Other
RRM
family RBPs
Other
Selaginella moellendorfii
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Cucsa.048210
Cucumis sativus
Cucsa.048210
N
0.703
chr4.CM0229.230.nc
Lotus japonicus
chr4.CM0229.230.nc
N
0.703
MDP0000162585
Malus x domestica
MDP0000162585
N
0.703
cassava31871.valid.m1
Manihot esculenta
cassava31871.valid.m1
N
0.719
BGIOSIBCE002155
Oryza indica
BGIOSIBCE002155
N
0.719
LOC_Os01g34190
Oryza sativa
LOC_Os01g34190
N
0.719
estExt_fgenesh1_pg.C_2810007
Physcomitrella patens
estExt_fgenesh1_pg.C_2810007
N
0.750
B9GGD6_POPTR
Populus trichocarpa
POPTR_0001s38150
N
0.703
ppa007087m
Prunus persica
ppa007087m
N
0.719
GSVIVG00021628001
Vitis vinifera
GSVIVG00021628001
N
0.703