CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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e_gw1.8.125.1
(
Emiliania huxleyi
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
e_gw1.8.125.1
T50124_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw1.8.125.1
RRM
34
104
LYLGHIPHGFYEEQMRGFFSQFGDVTRLRLARNKKTGASKHYAFVEFAHAEVASIVAQAMNGYLMFTKILV
Links
Other
RRM
family RBPs
Other
Emiliania huxleyi
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
gw1.11.214.1
Batrachochytrium dendrobatidis
gw1.11.214.1
N
0.704
e_gw1.16.107.1
Emiliania huxleyi
e_gw1.16.107.1
N
1.000
gw1.198.122.1
Physcomitrella patens
gw1.198.122.1
N
0.718
estExt_fgenesh2_pg.C_120136
Selaginella moellendorfii
estExt_fgenesh2_pg.C_120136
N
0.718