e_gw.9.159.1 (Branchiostoma floridae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 e_gw.9.159.1 T50260_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
G3BP2
M021_0.6 		Homo sapiens AGGAUDR RNAcompete
Ray et al.(2013)
RNCMPT00021 		0.714
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw.9.159.1 RRM 319 388

Links

Other RRM family RBPs
Other Branchiostoma floridae RBPs

46 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R008928 Ailuropoda melanoleuca Ame_R008928 I 0.000
Ame_R007258 Ailuropoda melanoleuca Ame_R007258 I 0.714
G3BP2 Anolis carolinensis ENSACAG00000008695 I 0.729
G3BP1 Anolis carolinensis ENSACAG00000009792 I 0.000
Q2KJ17_BOVIN Bos taurus ENSBTAG00000014041 I 0.714
G3BP1_BOVIN Bos taurus ENSBTAG00000020309 I 0.000
LOC100413275 Callithrix jacchus ENSCJAG00000019897 I 0.714
G3BP1 Callithrix jacchus ENSCJAG00000015407 I 0.000
G3BP1 Canis familiaris ENSCAFG00000017841 I 0.000
G3BP2 Canis familiaris ENSCAFG00000008371 I 0.714
G3BP2 Cavia porcellus ENSCPOG00000012052 I 0.714
ENSCPOG00000006626 Cavia porcellus ENSCPOG00000006626 I 0.000
G3BP2 Choloepus hoffmanni ENSCHOG00000005346 I 0.000
ENSCHOG00000010802 Choloepus hoffmanni ENSCHOG00000010802 I 0.000
ENSDARG00000011704 Danio rerio ENSDARG00000011704 I 0.700
g3bp2 Danio rerio ENSDARG00000014790 I 0.743
g3bp1 Danio rerio ENSDARG00000017741 I 0.000
G3BP2 Danio rerio ENSDARG00000074572 I 0.700
G3BP1 Dasypus novemcinctus ENSDNOG00000018758 I 0.000
G3BP2 Dasypus novemcinctus ENSDNOG00000012491 I 0.729
G3bp2 Dipodomys ordii ENSDORG00000004825 I 0.714
G3BP1 Echinops telfairi ENSETEG00000017447 I 0.000
G3BP2 Echinops telfairi ENSETEG00000016219 I 0.000
G3BP2 Equus caballus ENSECAG00000007917 I 0.714
LOC100060090 Equus caballus ENSECAG00000003368 I 0.000
G3BP2 Erinaceus europaeus ENSEEUG00000013436 I 0.714
G3BP1 Erinaceus europaeus ENSEEUG00000012278 I 0.000
G3BP2 Felis catus ENSFCAG00000010124 I 0.714
Q5ZMN1_CHICK Gallus gallus ENSGALG00000004160 N 0.000
G3BP2 Gallus gallus ENSGALG00000010882 I 0.714
G3BP1 Gasterosteus aculeatus ENSGACG00000016848 I 0.000
G3BP2 Gasterosteus aculeatus ENSGACG00000017342 I 0.714
G3BP2 Gorilla gorilla ENSGGOG00000014947 I 0.714
G3BP2 Homo sapiens ENSG00000138757 D 0.714
G3BP1 Homo sapiens ENSG00000145907 D 0.000
G3BP2 Loxodonta africana ENSLAFG00000023321 I 0.714
G3BP1 Loxodonta africana ENSLAFG00000009182 I 0.000
G3BP1 Macaca mulatta ENSMMUG00000014701 I 0.000
G3BP2 Macaca mulatta ENSMMUG00000002153 I 0.714
G3BP2 Macropus eugenii ENSMEUG00000004126 I 0.714
G3BP2 Meleagris gallopavo ENSMGAG00000007221 I 0.714
G3BP1 Meleagris gallopavo ENSMGAG00000005963 I 0.000
G3BP1 Microcebus murinus ENSMICG00000012235 I 0.000
G3BP2 Microcebus murinus ENSMICG00000007795 I 0.714
ENSMODG00000023523 Monodelphis domestica ENSMODG00000023523 I 0.000
G3BP2 Monodelphis domestica ENSMODG00000019205 I 0.714
XM_001367627.1 Monodelphis domestica ENSMODG00000013903 N 0.000
XM_001369493.1 Monodelphis domestica ENSMODG00000008993 I 0.000
G3bp1 Mus musculus ENSMUSG00000018583 I 0.000
G3bp2 Mus musculus ENSMUSG00000029405 I 0.714
G3BP1 Myotis lucifugus ENSMLUG00000001581 I 0.000
G3BP2 Myotis lucifugus ENSMLUG00000004753 I 0.714
G3BP2 Ochotona princeps ENSOPRG00000006307 I 0.714
G3BP1 Ochotona princeps ENSOPRG00000010562 I 0.000
ENSOANG00000004714 Ornithorhynchus anatinus ENSOANG00000004714 I 0.714
ENSOCUG00000022069 Oryctolagus cuniculus ENSOCUG00000022069 I 0.000
ENSOCUG00000022143 Oryctolagus cuniculus ENSOCUG00000022143 I 0.000
G3BP2 Oryctolagus cuniculus ENSOCUG00000003262 I 0.714
G3BP1 Oryzias latipes ENSORLG00000011422 I 0.000
G3BP2 Oryzias latipes ENSORLG00000007012 I 0.743
G3BP2 Otolemur garnettii ENSOGAG00000000157 I 0.714
G3BP2 Pan troglodytes ENSPTRG00000016175 I 0.714
G3BP1 Pan troglodytes ENSPTRG00000017438 I 0.000
ENSPPYG00000015968 Pongo pygmaeus ENSPPYG00000015968 I 0.000
ENSPPYG00000014846 Pongo pygmaeus ENSPPYG00000014846 I 0.714
G3BP2 Procavia capensis ENSPCAG00000015109 I 0.714
G3BP1 Pteropus vampyrus ENSPVAG00000017250 I 0.000
G3BP2 Pteropus vampyrus ENSPVAG00000010166 I 0.714
G3bp2 Rattus norvegicus ENSRNOG00000002433 I 0.714
G3bp1 Rattus norvegicus ENSRNOG00000013186 I 0.000
G3BP2 Sorex araneus ENSSARG00000009503 I 0.714
G3BP1 Spermophilus tridecemlineatus ENSSTOG00000015928 I 0.000
ENSSSCG00000017080 Sus scrofa ENSSSCG00000017080 I 0.000
ENSSSCG00000017079 Sus scrofa ENSSSCG00000017079 I 0.000
G3BP1 Taeniopygia guttata ENSTGUG00000000753 I 0.000
G3BP2 Taeniopygia guttata ENSTGUG00000001561 I 0.714
G3BP2 Takifugu rubripes ENSTRUG00000011405 I 0.729
G3BP1 Tarsius syrichta ENSTSYG00000004570 I 0.000
G3BP1 Tetraodon nigroviridis ENSTNIG00000012954 I 0.000
G3BP2 Tetraodon nigroviridis ENSTNIG00000011044 I 0.743
ENSTBEG00000012323 Tupaia belangeri ENSTBEG00000012323 I 0.714
G3BP1 Tupaia belangeri ENSTBEG00000004386 I 0.000
ENSTBEG00000008258 Tupaia belangeri ENSTBEG00000008258 I 0.700
G3BP2 Tursiops truncatus ENSTTRG00000013795 I 0.700
G3BP1 Vicugna pacos ENSVPAG00000004461 I 0.000
G3BP2 Vicugna pacos ENSVPAG00000010710 I 0.714
AAH45051 Xenopus laevis AAH45051 I 0.000
AAH72830 Xenopus laevis AAH72830 I 0.000
g3bp1 Xenopus tropicalis ENSXETG00000010712 I 0.000
g3bp2 Xenopus tropicalis ENSXETG00000000334 I 0.729