CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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mgf002289m
(
Mimulus guttatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
mgf002289m
T53590_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
mgf002289m
RRM
98
168
LFVSGLSFRTTEESLTNAFKNFGELTEVNLVMDKIANRPRGFAFLAYATEEESKKAIEGMHGKFLDGRVIF
Links
Other
RRM
family RBPs
Other
Mimulus guttatus
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XM_002888885.1
Arabidopsis lyrata
fgenesh2_kg.2__1616__AT1G73530.1
N
0.746
AT1G73530
Arabidopsis thaliana
AT1G73530-TAIR-G
N
0.718
PK27275.1
Cannabis sativa
PK27275.1
N
0.887
Cucsa.112520
Cucumis sativus
Cucsa.112520
N
0.845
Glyma16g34330.1
Glycine max
Glyma16g34330.1
N
0.887
MDP0000795431
Malus x domestica
MDP0000795431
N
0.746
LOC_Os04g49440
Oryza sativa
LOC_Os04g49440
N
0.803
B9I4X6_POPTR
Populus trichocarpa
POPTR_0012s03520
N
0.831
ppa019414m
Prunus persica
ppa019414m
N
0.845
GSVIVG00029394001
Vitis vinifera
GSVIVG00029394001
N
0.873