CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AT1G73530
(
Arabidopsis thaliana
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
AT1G73530-TAIR-G
T32680_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT1G73530.1-P
RRM
79
149
LYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIF
Links
Other
RRM
family RBPs
Other
Arabidopsis thaliana
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XM_002888885.1
Arabidopsis lyrata
fgenesh2_kg.2__1616__AT1G73530.1
N
0.958
B9I4X6_POPTR
Populus trichocarpa
POPTR_0012s03520
N
0.789
GSVIVG00029394001
Vitis vinifera
GSVIVG00029394001
N
0.775
PK27275.1
Cannabis sativa
PK27275.1
N
0.761
Glyma16g34330.1
Glycine max
Glyma16g34330.1
N
0.732
Cucsa.112520
Cucumis sativus
Cucsa.112520
N
0.718
mgf002289m
Mimulus guttatus
mgf002289m
N
0.718