CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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s_467614
(
Phytophthora sojae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
s_467614
T53934_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
s_467614
RRM
225
295
LFCGDLGNEVSDELLAHSFSKYASFQRARVVRDKLTHKSRGYGFVSFADPFDCAKALREMNGKYIGNRPVK
Links
Other
RRM
family RBPs
Other
Phytophthora sojae
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GP3.076550
Batrachochytrium dendrobatidis
GP3.076550
I
0.704
estExt_Genewise1Plus.C_1180017
Capitella teleta
estExt_Genewise1Plus.C_1180017
I
0.704
pasa_Sanger_mRNA18521
Chlamydomonas reinhardtii
pasa_Sanger_mRNA18521
N
0.718
estExtDG_fgenesh_newKGs_kg.C_110065
Emiliania huxleyi
estExtDG_fgenesh_newKGs_kg.C_110065
N
0.718
gw1.13.451.1
Micromonas pusilla
gw1.13.451.1
N
0.704
BGIOSIBCE007866
Oryza indica
BGIOSIBCE007866
I
0.704
GSPATP00035306001
Paramecium tetraurelia
GSPATP00035306001
N
0.718
fgenesh1_pg.C_scaffold_23000018
Phytophthora capsici
fgenesh1_pg.C_scaffold_23000018
N
0.972
PITG_12876
Phytophthora infestans
PITG_12876
N
0.986
fgenesh1_pg.C_scaffold_11000034
Phytophthora ramorum
fgenesh1_pg.C_scaffold_11000034
N
0.972
estExt_Genewise1.C_30147
Volvox carteri
estExt_Genewise1.C_30147
N
0.732