CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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pasa_Sanger_mRNA18521
(
Chlamydomonas reinhardtii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
pasa_Sanger_mRNA18521
T53873_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
pasa_Sanger_mRNA18521
RRM
61
131
IFVGDIGNEVTDDLLAKSFSKYSSFAKAKIVRDPRTKKSKGYGFVSFLDGQDFAKALREMNGKYIGNRPCK
Links
Other
RRM
family RBPs
Other
Chlamydomonas reinhardtii
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_Genewise1.C_30147
Volvox carteri
estExt_Genewise1.C_30147
N
0.972
SPPG_03010
Spizellomyces punctatus
SPPG_03010
I
0.732
s_467614
Phytophthora sojae
s_467614
N
0.718
XP_002167334.1
Hydra magnipapillata
XP_002167334.1
I
0.718
fgenesh1_pg.C_scaffold_23000018
Phytophthora capsici
fgenesh1_pg.C_scaffold_23000018
N
0.718
estExt_fgenesh2_pg.C_7640002
Branchiostoma floridae
estExt_fgenesh2_pg.C_7640002
I
0.704
PITG_12876
Phytophthora infestans
PITG_12876
N
0.704
estExt_fgenesh2_pg.C_360096
Branchiostoma floridae
estExt_fgenesh2_pg.C_360096
I
0.704