Ame_R011792 (Ailuropoda melanoleuca)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Ame_R011792 T55589_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		1.000
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		1.000
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		1.000
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.979
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.814
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Ame_R011792 RRM 11 80
Ame_R011792 RRM 106 175

Links

Other RRM family RBPs
Other Ailuropoda melanoleuca RBPs

332 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002875918.1 Arabidopsis lyrata scaffold_501926.1 N 0.000
XM_002892438.1 Arabidopsis lyrata fgenesh2_kg.1__949__AT1G09140.1 N 0.000
XM_002874870.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002776 N 0.000
XM_002889376.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000165 N 0.000
SR34 Arabidopsis thaliana AT1G02840-TAIR-G N 0.000
At-SR30 Arabidopsis thaliana AT1G09140-TAIR-G N 0.000
SR34b Arabidopsis thaliana AT4G02430-TAIR-G N 0.000
BRADI2G11990 Brachypodium distachyon BRADI2G11990 N 0.000
BRADI1G62780 Brachypodium distachyon BRADI1G62780 N 0.000
BRADI1G18070 Brachypodium distachyon BRADI1G18070 N 0.000
PK08657.1 Cannabis sativa PK08657.1 N 0.000
Cucsa.205570 Cucumis sativus Cucsa.205570 N 0.000
Cucsa.181840 Cucumis sativus Cucsa.181840 N 0.000
Glyma06g14060.1 Glycine max Glyma06g14060.1 N 0.000
Glyma19g39850.1 Glycine max Glyma19g39850.1 N 0.000
Glyma20g38060.1 Glycine max Glyma20g38060.1 N 0.000
Glyma03g37240.1 Glycine max Glyma03g37240.1 N 0.000
Glyma04g40740.1 Glycine max Glyma04g40740.1 N 0.000
chr5.CM0299.260.nc Lotus japonicus chr5.CM0299.260.nc N 0.000
MDP0000231034 Malus x domestica MDP0000231034 N 0.000
MDP0000271362 Malus x domestica MDP0000271362 N 0.000
MDP0000857322 Malus x domestica MDP0000857322 N 0.000
MDP0000268577 Malus x domestica MDP0000268577 N 0.000
MDP0000200391 Malus x domestica MDP0000200391 N 0.000
cassava4048.m1 Manihot esculenta cassava4048.m1 N 0.000
cassava22829.valid.m1 Manihot esculenta cassava22829.valid.m1 N 0.000
cassava17475.valid.m1 Manihot esculenta cassava17475.valid.m1 N 0.000
cassava17474.valid.m1 Manihot esculenta cassava17474.valid.m1 N 0.000
cassava1174.valid.m1 Manihot esculenta cassava1174.valid.m1 N 0.000
cassava4046.m1 Manihot esculenta cassava4046.m1 N 0.000
cassava1173.valid.m1 Manihot esculenta cassava1173.valid.m1 N 0.000
cassava4049.m1 Manihot esculenta cassava4049.m1 N 0.000
cassava24707.valid.m1 Manihot esculenta cassava24707.valid.m1 N 0.000
cassava4050.m1 Manihot esculenta cassava4050.m1 N 0.000
cassava24706.valid.m1 Manihot esculenta cassava24706.valid.m1 N 0.000
cassava4047.m1 Manihot esculenta cassava4047.m1 N 0.000
Medtr8g068270 Medicago truncatula Medtr8g068270 N 0.000
Medtr1g108050 Medicago truncatula Medtr1g108050 N 0.000
Medtr1g099910 Medicago truncatula Medtr1g099910 N 0.000
mgf007835m Mimulus guttatus mgf007835m N 0.000
BGIOSIBCE001550 Oryza indica BGIOSIBCE001550 N 0.000
BGIOSIBCE011068 Oryza indica BGIOSIBCE011068 N 0.000
BGIOSIBCE018731 Oryza indica BGIOSIBCE018731 N 0.000
LOC_Os05g30140 Oryza sativa LOC_Os05g30140 N 0.000
LOC_Os07g47630 Oryza sativa LOC_Os07g47630 N 0.000
LOC_Os03g22380 Oryza sativa LOC_Os03g22380 N 0.000
estExt_Genewise1.C_280136 Physcomitrella patens estExt_Genewise1.C_280136 N 0.000
e_gw1.7.233.1 Physcomitrella patens e_gw1.7.233.1 N 0.000
e_gw1.173.63.1 Physcomitrella patens e_gw1.173.63.1 N 0.000
B9N4J4_POPTR Populus trichocarpa POPTR_0005s02450 N 0.000
B9I9S0_POPTR Populus trichocarpa POPTR_0014s12440 N 0.000
B9I7H7_POPTR Populus trichocarpa POPTR_0013s01700 N 0.000
B9GSA0_POPTR Populus trichocarpa POPTR_0002s20650 N 0.000
ppa009033m Prunus persica ppa009033m N 0.000
ppa009045m Prunus persica ppa009045m N 0.000
ppa009968m Prunus persica ppa009968m N 0.000
ppa009360m Prunus persica ppa009360m N 0.000
ppa017674m Prunus persica ppa017674m N 0.000
30128.m008837 Ricinus communis 30128.m008837 N 0.000
29827.m002610 Ricinus communis 29827.m002610 N 0.000
30128.m008840 Ricinus communis 30128.m008840 N 0.000
29986.m001610 Ricinus communis 29986.m001610 N 0.000
gw1.41.236.1 Selaginella moellendorfii gw1.41.236.1 N 0.000
e_gw1.19.485.1 Selaginella moellendorfii e_gw1.19.485.1 N 0.000
Sb09g018110 Sorghum bicolor Sb09g018110 N 0.000
SB03G013010 Sorghum bicolor Sb03g013010 N 0.000
SB01G035680 Sorghum bicolor Sb01g035680 N 0.000
GSVIVG00031132001 Vitis vinifera GSVIVG00031132001 N 0.000
GSVIVG00027997001 Vitis vinifera GSVIVG00027997001 N 0.000
GRMZM2G170365 Zea mays GRMZM2G170365 N 0.000
GRMZM2G331811 Zea mays GRMZM2G331811 N 0.000
GRMZM2G436092 Zea mays GRMZM2G436092 N 0.000