BGIOSIBCE018731 (Oryza indica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 BGIOSIBCE018731 T32992_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BGIOSIBCE018731 RRM 9 76
BGIOSIBCE018731 RRM 110 176

Links

Other RRM family RBPs
Other Oryza indica RBPs

80 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os05g30140 Oryza sativa LOC_Os05g30140 N 0.993
SB03G013010 Sorghum bicolor Sb03g013010 N 0.926
GRMZM2G331811 Zea mays GRMZM2G331811 N 0.926
Sb09g018110 Sorghum bicolor Sb09g018110 N 0.919
GRMZM2G170365 Zea mays GRMZM2G170365 N 0.919
BGIOSIBCE001550 Oryza indica BGIOSIBCE001550 N 0.919
BRADI2G11990 Brachypodium distachyon BRADI2G11990 N 0.904
LOC_Os03g22380 Oryza sativa LOC_Os03g22380 N 0.889
LOC_Os07g47630 Oryza sativa LOC_Os07g47630 N 0.889
BGIOSIBCE011068 Oryza indica BGIOSIBCE011068 N 0.889
BRADI1G18070 Brachypodium distachyon BRADI1G18070 N 0.881
SB01G035680 Sorghum bicolor Sb01g035680 N 0.874
Cucsa.181840 Cucumis sativus Cucsa.181840 N 0.874
cassava4048.m1 Manihot esculenta cassava4048.m1 N 0.867
BRADI1G62780 Brachypodium distachyon BRADI1G62780 N 0.867
cassava4047.m1 Manihot esculenta cassava4047.m1 N 0.867
cassava4046.m1 Manihot esculenta cassava4046.m1 N 0.867
cassava1174.valid.m1 Manihot esculenta cassava1174.valid.m1 N 0.867
GSVIVG00027997001 Vitis vinifera GSVIVG00027997001 N 0.867
GRMZM2G436092 Zea mays GRMZM2G436092 N 0.867
cassava4050.m1 Manihot esculenta cassava4050.m1 N 0.867
cassava1173.valid.m1 Manihot esculenta cassava1173.valid.m1 N 0.867
B9I9S0_POPTR Populus trichocarpa POPTR_0014s12440 N 0.867
cassava4049.m1 Manihot esculenta cassava4049.m1 N 0.867
MDP0000231034 Malus x domestica MDP0000231034 N 0.859
Cucsa.205570 Cucumis sativus Cucsa.205570 N 0.859
29986.m001610 Ricinus communis 29986.m001610 N 0.859
XM_002892438.1 Arabidopsis lyrata fgenesh2_kg.1__949__AT1G09140.1 N 0.852
cassava24707.valid.m1 Manihot esculenta cassava24707.valid.m1 N 0.852
cassava24706.valid.m1 Manihot esculenta cassava24706.valid.m1 N 0.852
GSVIVG00031132001 Vitis vinifera GSVIVG00031132001 N 0.852
B9I7H7_POPTR Populus trichocarpa POPTR_0013s01700 N 0.844
Glyma20g38060.1 Glycine max Glyma20g38060.1 N 0.844
B9GSA0_POPTR Populus trichocarpa POPTR_0002s20650 N 0.837
Medtr1g099910 Medicago truncatula Medtr1g099910 N 0.837
chr5.CM0299.260.nc Lotus japonicus chr5.CM0299.260.nc N 0.837
30128.m008840 Ricinus communis 30128.m008840 N 0.830
ppa009033m Prunus persica ppa009033m N 0.830
ppa009045m Prunus persica ppa009045m N 0.830
XM_002874870.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002776 N 0.830
Glyma19g39850.1 Glycine max Glyma19g39850.1 N 0.822
ppa009968m Prunus persica ppa009968m N 0.822
ppa009360m Prunus persica ppa009360m N 0.822
cassava22829.valid.m1 Manihot esculenta cassava22829.valid.m1 N 0.822
At-SR30 Arabidopsis thaliana AT1G09140-TAIR-G N 0.815
Glyma03g37240.1 Glycine max Glyma03g37240.1 N 0.815
MDP0000271362 Malus x domestica MDP0000271362 N 0.815
Medtr8g068270 Medicago truncatula Medtr8g068270 N 0.815
e_gw1.7.233.1 Physcomitrella patens e_gw1.7.233.1 N 0.809
estExt_Genewise1.C_280136 Physcomitrella patens estExt_Genewise1.C_280136 N 0.809
XM_002889376.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000165 N 0.807
mgf007835m Mimulus guttatus mgf007835m N 0.807
e_gw1.173.63.1 Physcomitrella patens e_gw1.173.63.1 N 0.807
B9N4J4_POPTR Populus trichocarpa POPTR_0005s02450 N 0.807
mgf007149m Mimulus guttatus mgf007149m N 0.807
SR34 Arabidopsis thaliana AT1G02840-TAIR-G N 0.800
e_gw1.19.485.1 Selaginella moellendorfii e_gw1.19.485.1 N 0.785
gw1.41.236.1 Selaginella moellendorfii gw1.41.236.1 N 0.785
29827.m002610 Ricinus communis 29827.m002610 N 0.778
cassava17474.valid.m1 Manihot esculenta cassava17474.valid.m1 N 0.770
cassava17475.valid.m1 Manihot esculenta cassava17475.valid.m1 N 0.770
XM_002875918.1 Arabidopsis lyrata scaffold_501926.1 N 0.763
PK08657.1 Cannabis sativa PK08657.1 N 0.763
ppa017674m Prunus persica ppa017674m N 0.748
MDP0000857322 Malus x domestica MDP0000857322 N 0.748
B9I218_POPTR Populus trichocarpa POPTR_0012s02870 N 0.748
B9IDH4_POPTR Populus trichocarpa POPTR_0015s00690 N 0.748
SR34b Arabidopsis thaliana AT4G02430-TAIR-G N 0.748
mgf000052m Mimulus guttatus mgf000052m N 0.748
mgf014175m Mimulus guttatus mgf014175m N 0.748
mgf011321m Mimulus guttatus mgf011321m N 0.748
GSVIVG00038636001 Vitis vinifera GSVIVG00038636001 N 0.748
Glyma06g14060.1 Glycine max Glyma06g14060.1 N 0.748
Glyma04g40740.1 Glycine max Glyma04g40740.1 N 0.748
30128.m008837 Ricinus communis 30128.m008837 N 0.748
At-SR34a Arabidopsis thaliana AT3G49430-TAIR-G N 0.748
MDP0000268577 Malus x domestica MDP0000268577 N 0.741
MDP0000200391 Malus x domestica MDP0000200391 N 0.741
Medtr3g122850 Medicago truncatula Medtr3g122850 N 0.733
chr2.CM0249.1120.nc Lotus japonicus chr2.CM0249.1120.nc N 0.733