CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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fgenesh2_pm.3_#_206
(
Agaricus bisporus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
fgenesh2_pm.3_#_206
T56626_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_pm.3_#_206
RRM
118
187
LFISRLHKSATETDLRREFEGYGTIERVRIVRDKKNRSRGYAFIVYERERDMKAAYKESDGLHIMGKKIL
Links
Other
RRM
family RBPs
Other
Agaricus bisporus
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CC1G_12379
Coprinopsis cinerea
CC1G_12379
N
0.943
CNBG_0418
Cryptococcus neoformans
CNBG_0418
N
0.743
estExt_fgenesh2_pm.C_110163
Heterobasidion annosum
estExt_fgenesh2_pm.C_110163
N
0.886
fgenesh3_pm.C_scaffold_11000048
Laccaria bicolor
fgenesh3_pm.C_scaffold_11000048
N
0.943
fgenesh1_pg.C_scaffold_7000153
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_7000153
N
0.857
genemark.9242_g
Pleurotus ostreatus
genemark.9242_g
N
0.914
estExt_fgenesh3_pg.C_10163
Postia placenta
estExt_fgenesh3_pg.C_10163
N
0.857
fgenesh1_pm.C_scaffold_5000207
Schizophyllum commune
fgenesh1_pm.C_scaffold_5000207
N
0.857