CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CNBG_0418
(
Cryptococcus neoformans
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CNBG_0418
T28751_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CNBG_0418T0
RRM
147
216
LFISRLSKKANETDLRREFEMYGPIERIRIVRNRKGKSNGYAFIVYERERDMKAAYKDAEGIPIHHKKIL
Links
Other
RRM
family RBPs
Other
Cryptococcus neoformans
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
fgenesh2_pm.3_#_206
Agaricus bisporus
fgenesh2_pm.3_#_206
N
0.743
fgenesh3_pm.C_scaffold_11000048
Laccaria bicolor
fgenesh3_pm.C_scaffold_11000048
N
0.729
genemark.9242_g
Pleurotus ostreatus
genemark.9242_g
N
0.729
CC1G_12379
Coprinopsis cinerea
CC1G_12379
N
0.714
estExt_fgenesh2_pm.C_110163
Heterobasidion annosum
estExt_fgenesh2_pm.C_110163
N
0.700
fgenesh1_pm.C_scaffold_5000207
Schizophyllum commune
fgenesh1_pm.C_scaffold_5000207
N
0.700