CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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U2af1l4
(
Dipodomys ordii
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
ENSDORG00000009078
T00491_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDORP00000008526
CCCH ZF
13
39
KDKVNCSFYFKIGACRHGDRCSRLHNK
ENSDORP00000008526
RRM
38
102
NKPTFSQEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDADRAVAELNNRWFNGQAVH
Links
Other
CCCH ZF,RRM
family RBPs
Other
Dipodomys ordii
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
U2AF1L4
Choloepus hoffmanni
ENSCHOG00000001034
N
0.989
U2AF1L4
Sorex araneus
ENSSARG00000002027
N
0.989
Ame_R009106
Ailuropoda melanoleuca
Ame_R009106
N
0.989
U2AF1L4
Felis catus
ENSFCAG00000006383
N
0.989
U2AF1L4
Pteropus vampyrus
ENSPVAG00000012843
N
0.978
U2AF1L4
Tursiops truncatus
ENSTTRG00000003816
N
0.968
ENSETEG00000004795
Echinops telfairi
ENSETEG00000004795
N
0.967
U2AF1L4
Homo sapiens
ENSG00000161265
N
0.957
U2AF1L4
Macropus eugenii
ENSMEUG00000015882
N
0.946
U2AF1L4
Microcebus murinus
ENSMICG00000009981
N
0.804