CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBM26
(
Monodelphis domestica
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
ENSMODG00000001574
T00557_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMODP00000001919
CCCH ZF
277
301
KKRCRDYDEKGFCMRGDMCPFDHGS
ENSMODP00000001919
RRM
523
586
RKVPPELNNISKLNEHFSRFGTLVNLQVAYHGDPEGALIQFATYEEAKKAISSTEAVFNNRFIK
ENSMODP00000001919
RRM
886
941
TESDREDLLPHFAQYGEIEDCQIDDSSLHAVITFKTRAEAEAAAIHGSRFKGQDLK
ENSMODP00000001921
CCCH ZF
287
311
KKRCRDYDEKGFCMRGDMCPFDHGS
ENSMODP00000001921
RRM
528
591
RKVPPELNNISKLNEHFSRFGTLVNLQVAYHGDPEGALIQFATYEEAKKAISSTEAVFNNRFIK
ENSMODP00000001923
CCCH ZF
292
316
KKRCRDYDEKGFCMRGDMCPFDHGS
ENSMODP00000001923
RRM
533
596
RKVPPELNNISKLNEHFSRFGTLVNLQVAYHGDPEGALIQFATYEEAKKAISSTEAVFNNRFIK
ENSMODP00000001923
RRM
872
927
TESDREDLLPHFAQYGEIEDCQIDDSSLHAVITFKTRAEAEAAAIHGSRFKGQDLK
Links
Other
CCCH ZF,RRM
family RBPs
Other
Monodelphis domestica
RBPs
65 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RBM26
Ornithorhynchus anatinus
ENSOANG00000001531
N
0.979
RBM26
Ochotona princeps
ENSOPRG00000001124
N
0.978
Rbm26
Dipodomys ordii
ENSDORG00000006232
N
0.978
RBM26
Bos taurus
ENSBTAG00000017573
N
0.972
RBM26
Tursiops truncatus
ENSTTRG00000013800
N
0.972
RBM26
Spermophilus tridecemlineatus
ENSSTOG00000016031
N
0.972
RBM26
Tarsius syrichta
ENSTSYG00000000856
N
0.972
LOC100411227
Callithrix jacchus
ENSCJAG00000021261
N
0.972
RBM26
Loxodonta africana
ENSLAFG00000010689
N
0.972
Q4G3X9_MACMU
Macaca mulatta
ENSMMUG00000007529
N
0.972
RBM26
Gorilla gorilla
ENSGGOG00000005994
N
0.972
RBM26
Homo sapiens
ENSG00000139746
N
0.972
RBM26
Sus scrofa
ENSSSCG00000009479
N
0.972
RBM26
Canis familiaris
ENSCAFG00000005242
N
0.972
Ame_R008100
Ailuropoda melanoleuca
Ame_R008100
N
0.972
XR_023404.1
Pan troglodytes
ENSPTRG00000005949
N
0.972
ENSPPYG00000005430
Pongo pygmaeus
ENSPPYG00000005430
N
0.972
RBM26
Sorex araneus
ENSSARG00000012864
N
0.966
RBM26
Cavia porcellus
ENSCPOG00000021081
N
0.966
RBM26
Equus caballus
ENSECAG00000014547
N
0.966
Rbm26
Mus musculus
ENSMUSG00000022119
N
0.966
RGD1308297
Rattus norvegicus
ENSRNOG00000009836
N
0.959
RBM26
Taeniopygia guttata
ENSTGUG00000012585
N
0.959
RBM26
Anolis carolinensis
ENSACAG00000016128
N
0.952
RBM26
Oryctolagus cuniculus
ENSOCUG00000008843
N
0.952
RBM26
Gallus gallus
ENSGALG00000016910
N
0.952
RBM26
Echinops telfairi
ENSETEG00000017443
N
0.944
rbm26
Xenopus tropicalis
ENSXETG00000017810
N
0.891
RBM26
Erinaceus europaeus
ENSEEUG00000012342
N
0.883
RBM26
Procavia capensis
ENSPCAG00000000874
N
0.876
Q2T9I5
Xenopus laevis
Q2T9I5
N
0.871
AAH43744
Xenopus laevis
AAH43744
N
0.871
AAI11509
Xenopus laevis
AAI11509
N
0.871
RBM26
Dasypus novemcinctus
ENSDNOG00000004726
N
0.779
RBM26
Choloepus hoffmanni
ENSCHOG00000000529
N
0.738
RBM26
Otolemur garnettii
ENSOGAG00000009171
N
0.738
RBM26
Gasterosteus aculeatus
ENSGACG00000015254
N
0.735
RBM26
Tetraodon nigroviridis
ENSTNIG00000009468
N
0.727
RBM27
Oryctolagus cuniculus
ENSOCUG00000000186
N
0.720
RBM26
Takifugu rubripes
ENSTRUG00000017189
N
0.720
ENSGACG00000020719
Gasterosteus aculeatus
ENSGACG00000020719
N
0.717
RBM27
Monodelphis domestica
ENSMODG00000010182
N
0.717
ENSTRUG00000004518
Takifugu rubripes
ENSTRUG00000004518
N
0.714
RBM27
Sorex araneus
ENSSARG00000000313
N
0.710
RBM27
Microcebus murinus
ENSMICG00000003262
N
0.710
RBM27
Bos taurus
ENSBTAG00000011642
N
0.710
Rbm27
Mus musculus
ENSMUSG00000024491
N
0.710
RBM27
Loxodonta africana
ENSLAFG00000022447
N
0.710
RBM27
Homo sapiens
ENSG00000091009
N
0.710
RBM27
Macaca mulatta
ENSMMUG00000004476
N
0.710
RBM27
Gorilla gorilla
ENSGGOG00000013312
N
0.710
D3ZE52_RAT
Rattus norvegicus
ENSRNOG00000027250
N
0.710
RBM27
Tupaia belangeri
ENSTBEG00000004337
N
0.710
ENSPPYG00000015909
Pongo pygmaeus
ENSPPYG00000015909
N
0.710
RBM27
Tursiops truncatus
ENSTTRG00000016713
N
0.710
RBM27
Canis familiaris
ENSCAFG00000006456
N
0.710
RBM27
Pteropus vampyrus
ENSPVAG00000005218
N
0.710
RBM27
Cavia porcellus
ENSCPOG00000002498
N
0.710
RBM27
Dasypus novemcinctus
ENSDNOG00000019753
N
0.710
RBM27
Pan troglodytes
ENSPTRG00000017373
N
0.710
RBM27
Ochotona princeps
ENSOPRG00000005424
N
0.710
Ame_R013204
Ailuropoda melanoleuca
Ame_R013204
N
0.710
RBM27
Equus caballus
ENSECAG00000000883
N
0.710
RBM27
Ornithorhynchus anatinus
ENSOANG00000012563
N
0.707