CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Glyma02g46760.1
(
Glycine max
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
Glyma02g46760.1
T00952_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Glyma02g46760.1
CCCH ZF
164
181
ANLGFCKHGTSCRFYHGQ
Glyma02g46760.1
RRM
316
376
DSTFTEDDVSNYFNTFGPVADVRIPNQQRRMFGFVTFVHSETVKSVLDKGNPHCVRGSRVL
Links
Other
CCCH ZF,RRM
family RBPs
Other
Glycine max
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Glyma14g01930.1
Glycine max
Glyma14g01930.1
N
0.874
ppa019338m
Prunus persica
ppa019338m
N
0.713
cassava7063.valid.m1
Manihot esculenta
cassava7063.valid.m1
N
0.706