ppa019338m (Prunus persica)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		ppa019338m T01131_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ppa019338m CCCH ZF 182 207
ppa019338m RRM 347 407

Links

Other CCCH ZF,RRM family RBPs
Other Prunus persica RBPs

37 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava31399.valid.m1 Manihot esculenta cassava31399.valid.m1 N 0.897
cassava31400.valid.m1 Manihot esculenta cassava31400.valid.m1 N 0.897
cassava7063.valid.m1 Manihot esculenta cassava7063.valid.m1 N 0.862
B9IAR9_POPTR Populus trichocarpa POPTR_0014s16340 N 0.839
cassava36931.valid.m1 Manihot esculenta cassava36931.valid.m1 N 0.828
27613.m000645 Ricinus communis 27613.m000645 N 0.828
Glyma14g01930.1 Glycine max Glyma14g01930.1 N 0.816
GSVIVG00037782001 Vitis vinifera GSVIVG00037782001 N 0.816
Glyma08g43790.1 Glycine max Glyma08g43790.1 N 0.816
PK20504.1 Cannabis sativa PK20504.1 N 0.793
PK01281.1 Cannabis sativa PK01281.1 N 0.793
MDP0000906147 Malus x domestica MDP0000906147 N 0.782
B9GTF9_POPTR Populus trichocarpa POPTR_0002s22240 N 0.782
Glyma18g09020.1 Glycine max Glyma18g09020.1 N 0.782
Medtr3g077080 Medicago truncatula Medtr3g077080 N 0.770
AT2G05160 Arabidopsis thaliana AT2G05160-TAIR-G N 0.759
ppa003564m Prunus persica ppa003564m N 0.759
29223.m000023 Ricinus communis 29223.m000023 N 0.759
MDP0000214614 Malus x domestica MDP0000214614 N 0.759
mgf003557m Mimulus guttatus mgf003557m N 0.759
XM_002876131.1 Arabidopsis lyrata fgenesh2_kg.5__1664__AT3G52980.1 N 0.747
Medtr5g102170 Medicago truncatula Medtr5g102170 N 0.724
Glyma02g46760.1 Glycine max Glyma02g46760.1 N 0.713
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.713
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.713
XM_002877790.1 Arabidopsis lyrata fgenesh2_kg.5__1545__AT3G51950.1 N 0.713
AT3G51950 Arabidopsis thaliana AT3G51950-TAIR-G N 0.713
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.713
30169.m006471 Ricinus communis 30169.m006471 N 0.713
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.701
ppa002413m Prunus persica ppa002413m N 0.701
MDP0000120231 Malus x domestica MDP0000120231 N 0.701
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.701
mgf002273m Mimulus guttatus mgf002273m N 0.701
SB08G001980 Sorghum bicolor Sb08g001980 N 0.701
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.701
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.701