CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TA03790
(
Theileria annulata
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
TA03790
T01138_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
TA03790
CCCH ZF
13
37
EDRVNCPFFWKIGACRHGDQCSRTH
TA03790
RRM
83
141
FEEVFLELMKYGEIEDMVVCDNIGDHIIGNVYIKYSDESAACRAVTSLSGRYYGGRPIQ
TA03790
CCCH ZF
150
175
FREARCRQFVEGQCRRGGYCNFMHIK
Links
Other
CCCH ZF,RRM
family RBPs
Other
Theileria annulata
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
TP03_0294
Theileria parva
TP03_0294
N
0.973
EDO07135.1
Babesia bovis
EDO07135.1
N
0.873
PF11_0200
Plasmodium falciparum
PF11_0200
N
0.855
PY04677
Plasmodium yoelii
PY04677
N
0.845
PVX_091600
Plasmodium vivax
PVX_091600
N
0.845
PKH_091670
Plasmodium knowlesi
PKH_091670
N
0.845
PCHAS_091550
Plasmodium chabaudi
PCHAS_091550
N
0.836
PBANKA_092880
Plasmodium berghei
PBANKA_092880
N
0.836
TGVEG_060320
Toxoplasma gondii
TGVEG_060320
N
0.800
TGGT1_069020
Toxoplasma gondii
TGGT1_069020
N
0.800
TGME49_036910
Toxoplasma gondii
TGME49_036910
N
0.800
CMU_011770
Cryptosporidium muris
CMU_011770
N
0.709