CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PVX_091600
(
Plasmodium vivax
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
PVX_091600
T00798_0.6
EuPathDB (2010-Sep-21)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PVX_091600
CCCH ZF
13
37
EDRVNCPFFWKIGACRHGDQCSRSH
PVX_091600
RRM
83
141
YEEVFEELMKYGEIEDMVVCDNIGDHIIGNVYIKYTHEDYAEKAVKELNGRFYAGKPLQ
PVX_091600
CCCH ZF
150
175
FREARCRQFVDGQCRRGGYCNFMHIK
Links
Other
CCCH ZF,RRM
family RBPs
Other
Plasmodium vivax
RBPs
15 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PKH_091670
Plasmodium knowlesi
PKH_091670
N
1.000
PY04677
Plasmodium yoelii
PY04677
N
0.991
PCHAS_091550
Plasmodium chabaudi
PCHAS_091550
N
0.982
PBANKA_092880
Plasmodium berghei
PBANKA_092880
N
0.982
PF11_0200
Plasmodium falciparum
PF11_0200
N
0.973
TA03790
Theileria annulata
TA03790
N
0.845
EDO07135.1
Babesia bovis
EDO07135.1
N
0.845
TP03_0294
Theileria parva
TP03_0294
N
0.836
TGME49_036910
Toxoplasma gondii
TGME49_036910
N
0.827
TGGT1_069020
Toxoplasma gondii
TGGT1_069020
N
0.827
TGVEG_060320
Toxoplasma gondii
TGVEG_060320
N
0.827
CMU_011770
Cryptosporidium muris
CMU_011770
N
0.764
PITG_05688
Phytophthora infestans
PITG_05688
N
0.705
estExt_fgenesh1_kg.C_153200001
Phytophthora capsici
estExt_fgenesh1_kg.C_153200001
N
0.705
s_458600
Phytophthora sojae
s_458600
N
0.705