CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AMSG_11110
(
Thecamonas trahens
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
AMSG_11110
T01207_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AMSG_11110T0
CCCH ZF
76
102
YKTELCNAWSETGTCRYGDRCQFAHGT
AMSG_11110T0
CCCH ZF
114
140
YKTQECKSFWTTGMCPYGTRCKFIHSE
Links
Other
CCCH ZF
family RBPs
Other
Thecamonas trahens
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
fgeneshCV_pg.C_scaffold_14000116
Chlorella vulgaris
fgeneshCV_pg.C_scaffold_14000116
I
0.704
SPPG_04528
Spizellomyces punctatus
SPPG_04528
N
0.704