fgeneshCV_pg.C_scaffold_14000116 (Chlorella vulgaris)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 fgeneshCV_pg.C_scaffold_14000116 T06138_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ZFP36
M350_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
951_12324455 		0.704
ZFP36
M269_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
221_12324455 		0.704
ZFP36
M268_0.6 		Homo sapiens Sequence logo not available AUUUA RIP-chip
Cook et al.(2011)
194_18256032.1 		0.704
ZFP36
M267_0.6 		Homo sapiens Sequence logo not available UUAUUUAUU RIP-chip
Cook et al.(2011)
194_18256032 		0.704
ZFP36
M266_0.6 		Homo sapiens Sequence logo not available UUGUGS RIP-chip
Cook et al.(2011)
193_18367721.3 		0.704
ZFP36
M265_0.6 		Homo sapiens Sequence logo not available CUUGU RIP-chip
Cook et al.(2011)
193_18367721.2 		0.704
ZFP36
M264_0.6 		Homo sapiens Sequence logo not available HCYUBY RIP-chip
Cook et al.(2011)
193_18367721.1 		0.704
ZFP36
M263_0.6 		Homo sapiens Sequence logo not available AAUAA RIP-chip
Cook et al.(2011)
193_18367721 		0.704
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
fgeneshCV_pg.C_scaffold_14000116 CCCH ZF 48 74
fgeneshCV_pg.C_scaffold_14000116 CCCH ZF 86 112

Links

Other CCCH ZF family RBPs
Other Chlorella vulgaris RBPs

108 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
gw1.14.301.1 Coccomyxa C 169 gw1.14.301.1 N 0.926
0300010273 Ostreococcus tauri 0300010273 I 0.815
estExt_fgenesh2_kg.C_10578 Serpula lacrymans estExt_fgenesh2_kg.C_10578 N 0.815
gwEuk.3.753.1 Ostreococcus lucimarinus gwEuk.3.753.1 I 0.815
gw1.3.668.1 Ostreococcus RCC809 gw1.3.668.1 I 0.796
CC1G_04402 Coprinopsis cinerea CC1G_04402 N 0.796
fgenesh1_pg.C_scaffold_11000103 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_11000103 N 0.778
estExt_genemark.C_30534 Pleurotus ostreatus estExt_genemark.C_30534 N 0.778
gw1.1.1133.1 Micromonas pusilla gw1.1.1133.1 N 0.759
ENSORLG00000008378 Oryzias latipes ENSORLG00000008378 I 0.759
fgenesh2_pg.C_scaffold_32000041 Selaginella moellendorfii fgenesh2_pg.C_scaffold_32000041 N 0.759
e_gw1.45.79.1 Selaginella moellendorfii e_gw1.45.79.1 N 0.759
estExt_fgenesh2_pg.C_10793 Laccaria bicolor estExt_fgenesh2_pg.C_10793 N 0.759
ENSGACG00000008351 Gasterosteus aculeatus ENSGACG00000008351 I 0.759
estExt_fgenesh3_pg.C_770054 Postia placenta estExt_fgenesh3_pg.C_770054 N 0.759
estExt_fgenesh1_pm.C_10824 Schizophyllum commune estExt_fgenesh1_pm.C_10824 N 0.759
gw1.8.374.1 Chlorella NC64A gw1.8.374.1 N 0.759
ZFP36 Macropus eugenii ENSMEUG00000010317 I 0.759
EFA80829.1 Polysphondylium pallidum EFA80829.1 I 0.759
CMA121C Cyanidioschyzon merolae CMA121C N 0.759
EHI_008770 Entamoeba histolytica EHI_008770 N 0.741
e_gw1.1.2331.1 Agaricus bisporus e_gw1.1.2331.1 N 0.741
ZFP36 Tetraodon nigroviridis ENSTNIG00000000183 I 0.741
ZFP36L2 Takifugu rubripes ENSTRUG00000006923 I 0.741
au.g10607_t1 Chlamydomonas reinhardtii au.g10607_t1 N 0.741
ZFP36 Danio rerio ENSDARG00000044395 I 0.741
ENSORLG00000000589 Oryzias latipes ENSORLG00000000589 I 0.741
EDI_287240 Entamoeba dispar EDI_287240 N 0.741
EIN_295900 Entamoeba invadens EIN_295900 N 0.741
ZFP36L2 Tetraodon nigroviridis ENSTNIG00000017103 I 0.722
ZFP36 Monodelphis domestica ENSMODG00000013494 I 0.722
Zfp36l3 Rattus norvegicus ENSRNOG00000029788 I 0.722
Aqu1.221345 Amphimedon queenslandica Aqu1.221345 I 0.722
ZFP36 Takifugu rubripes ENSTRUG00000002023 I 0.722
fgenesh1_pg.C_scaffold_4000193 Sporobolomyces roseus fgenesh1_pg.C_scaffold_4000193 N 0.722
DDB_G0285973 Dictyostelium discoideum DDB_G0285973 I 0.722
ZFP36 Gasterosteus aculeatus ENSGACG00000008344 I 0.722
gw1.534.24.1 Capitella teleta gw1.534.24.1 I 0.722
zfp36l2 Danio rerio ENSDARG00000021806 I 0.722
fgenesh1_pg.scaffold_257000036 Physcomitrella patens fgenesh1_pg.scaffold_257000036 N 0.722
s_442346 Phytophthora sojae s_442346 N 0.722
PITG_03115 Phytophthora infestans PITG_03115 N 0.722
SPPG_04528 Spizellomyces punctatus SPPG_04528 N 0.722
ENSGACG00000013400 Gasterosteus aculeatus ENSGACG00000013400 I 0.722
CABZ01070258.1 Danio rerio ENSDARG00000040503 I 0.722
gw1.4.464.1 Volvox carteri gw1.4.464.1 N 0.714
fgenesh1_pg.C_scaffold_30000016 Phytophthora ramorum fgenesh1_pg.C_scaffold_30000016 N 0.704
ZFP36L1 Takifugu rubripes ENSTRUG00000012295 I 0.704
ZFP36L1 Tetraodon nigroviridis ENSTNIG00000002277 I 0.704
Ame_R000168 Ailuropoda melanoleuca Ame_R000168 I 0.704
ENSTNIG00000019802 Tetraodon nigroviridis ENSTNIG00000019802 I 0.704
estExt_fgenesh1_pg.C_110230 Phytophthora capsici estExt_fgenesh1_pg.C_110230 N 0.704
Ame_R016002 Ailuropoda melanoleuca Ame_R016002 I 0.704
ZFP36 Tursiops truncatus ENSTTRG00000003564 I 0.704
ZFP36L2 Tursiops truncatus ENSTTRG00000006356 I 0.704
e_gw1.40.110.1 Trichoplax adhaerens e_gw1.40.110.1 I 0.704
estExt_fgeneshDP_kg.C_230001 Dictyostelium purpureum estExt_fgeneshDP_kg.C_230001 I 0.704
gw1.30.59.1 Lottia gigantea gw1.30.59.1 N 0.704
e_gw.346.37.1 Nematostella vectensis e_gw.346.37.1 I 0.704
zfp36l1 Xenopus tropicalis ENSXETG00000016987 I 0.704
estExt_fgenesh1_pg.C_3580026 Physcomitrella patens estExt_fgenesh1_pg.C_3580026 N 0.704
zfp36l2 Xenopus tropicalis ENSXETG00000009274 I 0.704
fgenesh2_pg.scaffold_13000206 Monosiga brevicollis fgenesh2_pg.scaffold_13000206 N 0.704
ZFP36 Pteropus vampyrus ENSPVAG00000011124 I 0.704
ZFP36 Cavia porcellus ENSCPOG00000011363 I 0.704
LOC100386590 Callithrix jacchus ENSCJAG00000014571 I 0.704
LOC100397247 Callithrix jacchus ENSCJAG00000014156 I 0.704
ZFP36L2 Canis familiaris ENSCAFG00000002438 I 0.704
Zfp36 Dipodomys ordii ENSDORG00000013487 I 0.704
ZFP36 Homo sapiens ENSG00000128016 D 0.704
ZFP36 Gorilla gorilla ENSGGOG00000014399 I 0.704
ZFP36L2 Gorilla gorilla ENSGGOG00000001402 I 0.704
ZFP36L1 Gasterosteus aculeatus ENSGACG00000011271 I 0.704
ZFP36L2 Homo sapiens ENSG00000152518 I 0.704
Q1JP65_BOVIN Bos taurus ENSBTAG00000003553 I 0.704
ZFP36L2 Anolis carolinensis ENSACAG00000014740 I 0.704
AAI00163 Xenopus laevis AAI00163 I 0.704
AAH84197 Xenopus laevis AAH84197 I 0.704
AAH44086 Xenopus laevis AAH44086 I 0.704
AAD24208 Xenopus laevis AAD24208 I 0.704
Q7ZXW9 Xenopus laevis Q7ZXW9 I 0.704
AMSG_11110 Thecamonas trahens AMSG_11110 N 0.704
amel4_ncbi_hmm10964 Apis mellifera amel4_ncbi_hmm10964 I 0.704
PTTG_07763 Puccinia triticina PTTG_07763 N 0.704
PTSG_01604 Salpingoeca rosetta PTSG_01604 N 0.704
ZFP36L2 Loxodonta africana ENSLAFG00000004265 I 0.704
ZFP36L2 Macropus eugenii ENSMEUG00000010649 I 0.704
Zfp36l2 Rattus norvegicus ENSRNOG00000005067 I 0.704
ZFP36L2 Pan troglodytes ENSPTRG00000011870 I 0.704
ZFP36 Pan troglodytes ENSPTRG00000010968 I 0.704
ENSPPYG00000012458 Pongo pygmaeus ENSPPYG00000012458 I 0.704
Zfp36 Rattus norvegicus ENSRNOG00000019673 I 0.704
ENSSSCG00000008460 Sus scrofa ENSSSCG00000008460 I 0.704
ZFP36 Tupaia belangeri ENSTBEG00000005948 I 0.704
ZFP36 Sus scrofa ENSSSCG00000010708 I 0.704
ZFP36L2 Sus scrofa ENSSSCG00000008461 I 0.704
ENSPPYG00000010577 Pongo pygmaeus ENSPPYG00000010577 I 0.704
ZFP36L1 Oryzias latipes ENSORLG00000011106 I 0.704
ZFP36L2 Monodelphis domestica ENSMODG00000000407 I 0.704
ZFP36L2 Myotis lucifugus ENSMLUG00000015588 I 0.704
ZFP36 Myotis lucifugus ENSMLUG00000002942 I 0.704
ZFP36L2 Microcebus murinus ENSMICG00000010318 I 0.704
Zfp36 Mus musculus ENSMUSG00000044786 I 0.704
Zfp36l2 Mus musculus ENSMUSG00000045817 I 0.704
ZFP36 Oryctolagus cuniculus ENSOCUG00000003400 I 0.704
ZFP36L2 Ornithorhynchus anatinus ENSOANG00000002848 I 0.704
Zfp36l3 Mus musculus ENSMUSG00000059334 I 0.704
ZFP36L2 Tupaia belangeri ENSTBEG00000012370 I 0.704